Strain Fitness in Variovorax sp. SCN45 around GFF1490

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
82,471	+		GFF1489	0.38	+0.3
82,472	-		GFF1489	0.38	-0.4
82,951	+		GFF1489	0.71	-0.0
82,952	-		GFF1489	0.71	+0.3
83,191	+		GFF1489	0.88	+0.1
83,192	-		GFF1489	0.88	-0.9
83,192	-		GFF1489	0.88	-0.2
83,192	-		GFF1489	0.88	-0.4
83,192	-		GFF1489	0.88	-0.3
83,192	-		GFF1489	0.88	+1.0
83,371	+				+0.1
83,887	+		GFF1490	0.57	-0.2
83,950	+		GFF1490	0.64	-1.4
83,951	-		GFF1490	0.64	+0.5
83,951	-		GFF1490	0.64	+0.5
83,951	-		GFF1490	0.64	-1.0
84,007	+		GFF1490	0.70	-0.1
84,007	+		GFF1490	0.70	+4.1
84,007	+		GFF1490	0.70	+0.1
84,008	-		GFF1490	0.70	-1.1
84,102	-		GFF1490	0.81	+2.7
84,102	-		GFF1490	0.81	-0.3
84,187	+				-0.2
84,187	+				-1.1
84,188	-				-1.2
84,188	-				-3.0
84,310	+				+0.2
84,310	+				-0.5
84,311	-				-0.8
84,437	+		GFF1491	0.14	-0.7
84,511	+		GFF1491	0.22	-0.3
84,676	+		GFF1491	0.39	-0.5
84,676	+		GFF1491	0.39	+1.2
84,676	+		GFF1491	0.39	+0.8
84,676	+		GFF1491	0.39	-1.9
84,820	+		GFF1491	0.55	+1.4
84,944	-		GFF1491	0.68	-1.4
84,944	-		GFF1491	0.68	-0.3
84,944	-		GFF1491	0.68	+0.8
85,003	+		GFF1491	0.74	-0.8
85,062	+		GFF1491	0.81	-0.3
85,062	+		GFF1491	0.81	-0.2
85,063	-		GFF1491	0.81	-1.1
85,063	-		GFF1491	0.81	-0.2
85,063	-		GFF1491	0.81	+0.2
85,075	+		GFF1491	0.82	+0.4
85,237	+				-1.2
85,238	-				+0.1
85,238	-				+0.4
85,238	-				+0.4