Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1386 and GFF1387 are separated by 41 nucleotides GFF1387 and GFF1388 overlap by 4 nucleotides GFF1388 and GFF1389 overlap by 4 nucleotides
GFF1386 - Uncharacterized transporter YebQ, major facilitator superfamily (MFS), at 732,737 to 734,095
GFF1386
GFF1387 - Paraquat-inducible protein A, at 734,137 to 734,763
GFF1387
GFF1388 - Paraquat-inducible protein A, at 734,760 to 735,506
GFF1388
GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149
GFF1389
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2 at 734.102 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.115 kb on + strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.116 kb on - strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.126 kb on + strand at 734.127 kb on - strand at 734.127 kb on - strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.164 kb on + strand at 734.465 kb on - strand, within GFF1387 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.003 kb on + strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.004 kb on - strand, within GFF1388 at 735.007 kb on + strand, within GFF1388 at 735.008 kb on - strand, within GFF1388 at 735.060 kb on + strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.061 kb on - strand, within GFF1388 at 735.087 kb on + strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.088 kb on - strand, within GFF1388 at 735.109 kb on - strand, within GFF1388 at 735.237 kb on + strand, within GFF1388 at 735.238 kb on - strand, within GFF1388 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.735 kb on - strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.795 kb on + strand, within GFF1389 at 735.796 kb on - strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.923 kb on + strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 735.924 kb on - strand, within GFF1389 at 736.073 kb on + strand, within GFF1389 at 736.073 kb on + strand, within GFF1389 at 736.074 kb on - strand, within GFF1389 at 736.074 kb on - strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.413 kb on - strand, within GFF1389
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL remove 734,102 + -0.2 734,115 + -1.0 734,115 + -1.9 734,115 + -0.9 734,116 - -0.5 734,116 - +0.1 734,116 - -0.6 734,126 + +0.1 734,126 + -0.1 734,126 + -0.2 734,126 + +1.5 734,127 - -0.3 734,127 - -0.9 734,164 + +1.5 734,164 + -0.7 734,164 + -1.3 734,164 + -0.1 734,465 - GFF1387 0.52 +1.3 735,003 + GFF1388 0.33 +0.5 735,003 + GFF1388 0.33 -0.4 735,003 + GFF1388 0.33 +0.6 735,003 + GFF1388 0.33 +0.5 735,003 + GFF1388 0.33 +0.3 735,003 + GFF1388 0.33 -0.7 735,003 + GFF1388 0.33 +0.5 735,003 + GFF1388 0.33 -0.4 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 -1.1 735,003 + GFF1388 0.33 +0.0 735,003 + GFF1388 0.33 -0.4 735,003 + GFF1388 0.33 +0.1 735,003 + GFF1388 0.33 +0.6 735,003 + GFF1388 0.33 +1.0 735,003 + GFF1388 0.33 +1.1 735,003 + GFF1388 0.33 +0.2 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 -1.4 735,003 + GFF1388 0.33 -0.1 735,003 + GFF1388 0.33 +1.8 735,004 - GFF1388 0.33 -0.3 735,004 - GFF1388 0.33 +0.6 735,004 - GFF1388 0.33 +1.6 735,004 - GFF1388 0.33 +0.0 735,004 - GFF1388 0.33 -0.4 735,004 - GFF1388 0.33 -0.6 735,004 - GFF1388 0.33 -0.1 735,004 - GFF1388 0.33 -0.8 735,004 - GFF1388 0.33 -0.5 735,004 - GFF1388 0.33 +0.2 735,004 - GFF1388 0.33 -0.0 735,004 - GFF1388 0.33 +0.2 735,004 - GFF1388 0.33 +0.6 735,004 - GFF1388 0.33 +0.1 735,004 - GFF1388 0.33 +0.5 735,007 + GFF1388 0.33 -0.6 735,008 - GFF1388 0.33 -0.7 735,060 + GFF1388 0.40 +0.5 735,061 - GFF1388 0.40 -0.3 735,061 - GFF1388 0.40 -1.4 735,061 - GFF1388 0.40 -0.2 735,087 + GFF1388 0.44 +0.2 735,088 - GFF1388 0.44 +0.1 735,088 - GFF1388 0.44 -0.1 735,088 - GFF1388 0.44 +1.5 735,088 - GFF1388 0.44 -0.1 735,109 - GFF1388 0.47 -0.3 735,237 + GFF1388 0.64 +0.2 735,238 - GFF1388 0.64 -1.4 735,735 - GFF1389 0.14 -0.5 735,735 - GFF1389 0.14 -0.4 735,735 - GFF1389 0.14 -0.2 735,735 - GFF1389 0.14 -0.0 735,795 + GFF1389 0.18 -1.0 735,795 + GFF1389 0.18 +0.0 735,795 + GFF1389 0.18 -0.1 735,796 - GFF1389 0.18 -0.6 735,923 + GFF1389 0.26 -2.4 735,923 + GFF1389 0.26 -0.1 735,923 + GFF1389 0.26 -0.7 735,923 + GFF1389 0.26 -0.9 735,924 - GFF1389 0.26 +2.5 735,924 - GFF1389 0.26 +0.0 735,924 - GFF1389 0.26 -0.0 736,073 + GFF1389 0.35 -0.9 736,073 + GFF1389 0.35 -0.9 736,074 - GFF1389 0.35 +0.8 736,074 - GFF1389 0.35 -1.0 736,166 + GFF1389 0.40 -0.0 736,166 + GFF1389 0.40 +0.5 736,166 + GFF1389 0.40 -0.8 736,412 + GFF1389 0.55 +0.5 736,412 + GFF1389 0.55 -1.4 736,413 - GFF1389 0.55 -0.2 736,413 - GFF1389 0.55 -1.6
Or see this region's nucleotide sequence