Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF851 and GFF852 are separated by 223 nucleotides GFF852 and GFF853 are separated by 7 nucleotides GFF853 and GFF854 overlap by 4 nucleotides GFF854 and GFF855 are separated by 31 nucleotides
GFF851 - Two-component system sensor histidine kinase, at 159,573 to 160,619
GFF851
GFF852 - hypothetical protein, at 160,843 to 161,103
GFF852
GFF853 - hypothetical protein, at 161,111 to 162,307
GFF853
GFF854 - hypothetical protein, at 162,304 to 162,867
GFF854
GFF855 - Palmitoyl-CoA hydrolase( EC:3.1.2.2 ), at 162,899 to 163,588
GFF855
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1 at 160.295 kb on - strand, within GFF851 at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 161.039 kb on - strand, within GFF852 at 161.203 kb on - strand at 161.308 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.652 kb on + strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 162.102 kb on + strand, within GFF853 at 162.389 kb on + strand, within GFF854 at 162.465 kb on - strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.883 kb on + strand at 162.883 kb on + strand at 162.883 kb on + strand at 162.884 kb on - strand at 163.254 kb on + strand, within GFF855 at 163.254 kb on + strand, within GFF855 at 163.255 kb on - strand, within GFF855
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL remove 160,295 - GFF851 0.69 +0.9 160,540 + +0.3 160,540 + +0.1 160,540 + -0.2 160,540 + -0.1 160,540 + -0.4 161,039 - GFF852 0.75 -1.3 161,203 - -0.5 161,308 - GFF853 0.16 -0.9 161,398 - GFF853 0.24 -0.1 161,398 - GFF853 0.24 +0.7 161,652 + GFF853 0.45 -1.0 161,761 - GFF853 0.54 -0.3 161,761 - GFF853 0.54 -0.4 161,827 - GFF853 0.60 -1.0 161,827 - GFF853 0.60 -0.0 161,827 - GFF853 0.60 +0.3 161,827 - GFF853 0.60 -0.4 161,827 - GFF853 0.60 +0.9 162,102 + GFF853 0.83 -1.4 162,389 + GFF854 0.15 -0.8 162,465 - GFF854 0.29 -0.7 162,621 + GFF854 0.56 -1.4 162,621 + GFF854 0.56 -0.9 162,791 + GFF854 0.86 -1.2 162,791 + GFF854 0.86 -0.7 162,883 + -0.2 162,883 + +0.7 162,883 + -0.9 162,884 - -1.0 163,254 + GFF855 0.51 +0.2 163,254 + GFF855 0.51 +0.0 163,255 - GFF855 0.52 -0.4
Or see this region's nucleotide sequence