Strain Fitness in Variovorax sp. SCN45 around GFF838

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
142,605	+				+1.4
142,605	+				-1.2
142,605	+				-1.8
142,606	-				-0.9
142,758	+		GFF837	0.18	-0.4
142,758	+		GFF837	0.18	+0.4
142,759	-		GFF837	0.18	-0.9
142,759	-		GFF837	0.18	+1.3
142,782	+		GFF837	0.21	+0.5
142,782	+		GFF837	0.21	-0.6
143,278	-		GFF837	0.79	-1.2
143,319	+		GFF837	0.84	-0.7
143,319	+		GFF837	0.84	-1.1
143,319	+		GFF837	0.84	+0.7
143,319	+		GFF837	0.84	-2.2
143,320	-		GFF837	0.84	-1.1
143,361	+		GFF837	0.89	+1.0
143,361	+		GFF837	0.89	-0.1
143,361	+		GFF837	0.89	-0.7
143,361	+		GFF837	0.89	+0.3
143,362	-		GFF837	0.89	-0.1
143,362	-		GFF837	0.89	-0.8
143,362	-		GFF837	0.89	-1.5
143,495	+				+0.1
143,496	-				-0.4
143,525	+				+1.9
143,804	+		GFF838	0.32	+0.7
143,849	+		GFF838	0.36	+0.2
143,849	+		GFF838	0.36	+2.8
143,849	+		GFF838	0.36	-0.1
143,850	-		GFF838	0.36	+0.3
143,864	+		GFF838	0.37	+0.3
143,865	-		GFF838	0.38	-0.1
144,269	+		GFF838	0.74	+0.0
144,531	-				-0.2
144,599	+				-0.6
144,763	+				-0.6
144,763	+				-0.9
144,763	+				+0.7
144,764	-				+1.9
144,783	+				-0.7
144,784	-				-1.0
145,036	+				+0.3
145,036	+				-0.7
145,036	+				-1.1
145,036	+				-0.7
145,036	+				-0.1
145,037	-				+1.9
145,037	-				-0.2
145,037	-				-0.2
145,037	-				-0.5
145,427	-		GFF839	0.29	-0.8
145,427	-		GFF839	0.29	+1.3