Strain Fitness in Variovorax sp. SCN45 around GFF813

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
117,342	+				-0.3
117,342	+				-0.6
117,342	+				-0.1
117,343	-				+0.9
117,343	-				+0.2
117,378	+		GFF812	0.12	-0.0
117,378	+		GFF812	0.12	-0.7
117,378	+		GFF812	0.12	+0.2
117,378	+		GFF812	0.12	+0.1
117,378	+		GFF812	0.12	-1.9
117,378	+		GFF812	0.12	-2.0
117,378	+		GFF812	0.12	+1.3
117,378	+		GFF812	0.12	-0.4
117,379	-		GFF812	0.12	+0.8
117,379	-		GFF812	0.12	-1.9
117,379	-		GFF812	0.12	-0.2
117,379	-		GFF812	0.12	+0.5
117,379	-		GFF812	0.12	-1.7
117,379	-		GFF812	0.12	+1.0
117,379	-		GFF812	0.12	+0.3
117,379	-		GFF812	0.12	+1.4
117,465	+		GFF812	0.26	+0.5
117,465	+		GFF812	0.26	-0.1
117,465	+		GFF812	0.26	-0.7
117,465	+		GFF812	0.26	+2.3
117,465	+		GFF812	0.26	-1.3
117,465	+		GFF812	0.26	-0.7
117,465	+		GFF812	0.26	+0.5
117,465	+		GFF812	0.26	+0.3
117,465	+		GFF812	0.26	-0.7
117,465	+		GFF812	0.26	-0.2
117,465	+		GFF812	0.26	+0.3
117,466	-		GFF812	0.27	-1.1
117,466	-		GFF812	0.27	-0.2
117,466	-		GFF812	0.27	-0.1
117,466	-		GFF812	0.27	-1.4
117,466	-		GFF812	0.27	-1.2
117,466	-		GFF812	0.27	-1.1
117,466	-		GFF812	0.27	-1.5
117,466	-		GFF812	0.27	-0.1
117,466	-		GFF812	0.27	-1.0
117,466	-		GFF812	0.27	+1.9
117,466	-		GFF812	0.27	-2.2
117,466	-		GFF812	0.27	+1.1
117,466	-		GFF812	0.27	+0.1
117,466	-		GFF812	0.27	-0.1
117,466	-		GFF812	0.27	-0.9
117,466	-		GFF812	0.27	-1.0
117,466	-		GFF812	0.27	-0.9
117,474	+		GFF812	0.28	-0.7
117,474	+		GFF812	0.28	+1.1
117,474	+		GFF812	0.28	+0.1
117,561	+		GFF812	0.43	-0.2
117,561	+		GFF812	0.43	-0.3
117,562	-		GFF812	0.43	+0.9
117,562	-		GFF812	0.43	-1.1
117,562	-		GFF812	0.43	-1.4
117,562	-		GFF812	0.43	+0.3
117,648	+		GFF812	0.57	-1.0
117,648	+		GFF812	0.57	-0.4
117,648	+		GFF812	0.57	-0.3
117,648	+		GFF812	0.57	+0.7
117,649	-		GFF812	0.58	+0.9
117,649	-		GFF812	0.58	+1.5
117,649	-		GFF812	0.58	+0.1
117,649	-		GFF812	0.58	+1.5
117,894	+				+0.3
117,894	+				+0.8
117,983	-				-0.3
117,995	+				-0.6
117,995	+				+0.1
118,157	+				-0.1
118,158	-				-0.9
118,158	-				+0.8
118,194	-				+0.2
118,242	+				-1.2
118,242	+				+0.5
118,242	+				-0.3
118,243	-				-0.1
118,243	-				+0.0
118,243	-				-1.4
118,243	-				-0.0
118,246	+				-0.1
118,246	+				-0.1
118,246	+				-0.6
118,247	-				-0.6
118,248	+				+0.0
118,294	-				-0.1
118,352	+				-0.2
118,352	+				-1.2
118,353	-				-0.7
118,353	-				+0.5
118,353	-				+0.3
118,353	-				+2.9
118,399	+				+0.1
118,400	-				-0.7
118,400	-				-1.5
118,400	-				-0.1
118,435	+		GFF813	0.10	+0.3
118,435	+		GFF813	0.10	-0.1
118,435	+		GFF813	0.10	-0.4
118,435	+		GFF813	0.10	-1.2
118,435	+		GFF813	0.10	+0.3
118,435	+		GFF813	0.10	+0.1
118,435	+		GFF813	0.10	-0.2
118,436	-		GFF813	0.10	-2.2
118,436	-		GFF813	0.10	-0.2
118,436	-		GFF813	0.10	-1.9
118,436	-		GFF813	0.10	+0.5
118,436	-		GFF813	0.10	+1.1
118,436	-		GFF813	0.10	-0.5
118,471	+		GFF813	0.14	-0.1
118,471	+		GFF813	0.14	-0.1
118,471	+		GFF813	0.14	-1.0
118,471	+		GFF813	0.14	-1.0
118,472	-		GFF813	0.14	-1.4
118,472	-		GFF813	0.14	-0.9
118,472	-		GFF813	0.14	-1.8
118,472	-		GFF813	0.14	-0.1
118,869	+		GFF813	0.56	+0.2
118,870	-		GFF813	0.56	-0.6
119,024	-		GFF813	0.73	-1.3
119,293	+				+0.3
119,293	+				-0.3
119,293	+				+0.7
119,293	+				-0.1
119,293	+				-0.3
119,293	+				-0.7
119,293	+				-0.1
119,293	+				-0.4
119,294	-				-0.4
119,294	-				+0.7
119,294	-				-0.4
119,294	-				+0.3
119,294	-				+0.8
119,294	-				-1.8
119,294	-				+0.1
119,310	+				+0.3
119,310	+				-1.8
119,311	-				-0.1
119,391	+				-1.3
119,391	+				-0.2
119,391	+				-0.1
119,392	-				+0.0
119,392	-				-0.1
119,392	-				+0.9
119,392	-				-0.4
119,392	-				-0.2
119,394	-				-0.1
119,473	+				-0.9
119,659	+		GFF814	0.27	-0.9
119,659	+		GFF814	0.27	-1.9
119,660	-		GFF814	0.27	-0.7
119,660	-		GFF814	0.27	+0.4
119,660	-		GFF814	0.27	-0.1
119,710	+		GFF814	0.32	+0.1
119,710	+		GFF814	0.32	-0.3
119,710	+		GFF814	0.32	+0.3
119,710	+		GFF814	0.32	-0.7
119,710	+		GFF814	0.32	+1.9
119,711	-		GFF814	0.33	-0.0
119,711	-		GFF814	0.33	-1.9
119,857	+		GFF814	0.47	-0.7
119,857	+		GFF814	0.47	-0.3
119,857	+		GFF814	0.47	+0.9
119,857	+		GFF814	0.47	+0.6
119,858	-		GFF814	0.48	+0.3
119,858	-		GFF814	0.48	-0.5
119,858	-		GFF814	0.48	-0.2
119,858	-		GFF814	0.48	+0.5
119,858	-		GFF814	0.48	-0.9
119,863	+		GFF814	0.48	+0.7
119,863	+		GFF814	0.48	-0.3
119,863	+		GFF814	0.48	-1.4
119,863	+		GFF814	0.48	-0.1
119,863	+		GFF814	0.48	-1.5
119,863	+		GFF814	0.48	+0.5
119,864	-		GFF814	0.48	-0.1
119,864	-		GFF814	0.48	+0.9
119,864	-		GFF814	0.48	+0.0
119,864	-		GFF814	0.48	+0.5
119,864	-		GFF814	0.48	-0.1
119,950	+		GFF814	0.57	-1.1
119,950	+		GFF814	0.57	+0.2
119,950	+		GFF814	0.57	+0.4
119,950	+		GFF814	0.57	-1.0
119,950	+		GFF814	0.57	+0.3
119,950	+		GFF814	0.57	-0.4
119,950	+		GFF814	0.57	-0.2
119,950	+		GFF814	0.57	-0.0
119,950	+		GFF814	0.57	-0.3
119,951	-		GFF814	0.57	-0.2
119,951	-		GFF814	0.57	-0.7
119,951	-		GFF814	0.57	+0.1
119,951	-		GFF814	0.57	-0.8
119,951	-		GFF814	0.57	-1.1
120,133	+		GFF814	0.76	+0.2
120,133	+		GFF814	0.76	+0.3
120,134	-		GFF814	0.76	-1.2
120,134	-		GFF814	0.76	+0.7
120,134	-		GFF814	0.76	-1.1