Strain Fitness in Variovorax sp. SCN45 around GFF7390

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
6,994	+		GFF7389	0.44	-0.1
6,995	-		GFF7389	0.44	-0.3
7,133	-		GFF7389	0.54	-0.6
7,489	+		GFF7389	0.78	-0.4
7,489	+		GFF7389	0.78	+1.2
7,525	+		GFF7389	0.81	-0.8
7,525	+		GFF7389	0.81	+1.3
7,525	+		GFF7389	0.81	+2.2
7,550	-		GFF7389	0.83	-0.6
7,550	-		GFF7389	0.83	-0.9
7,628	-		GFF7389	0.88	-0.1
7,690	+				-1.5
7,690	+				+0.5
7,726	+				-1.0
7,898	-				+0.6
7,898	-				+0.9
8,150	+		GFF7390	0.23	+0.6
8,150	+		GFF7390	0.23	-1.0
8,151	-		GFF7390	0.23	+0.8
8,151	-		GFF7390	0.23	-0.3
8,241	+		GFF7390	0.29	+0.9
8,242	-		GFF7390	0.29	+2.2
8,242	-		GFF7390	0.29	+0.3
8,503	+		GFF7390	0.47	+0.7
8,503	+		GFF7390	0.47	-1.4
8,504	-		GFF7390	0.47	-0.2
8,657	+		GFF7390	0.57	-0.4
8,763	+		GFF7390	0.64	-1.3
8,932	+		GFF7390	0.75	-0.2
9,014	+		GFF7390	0.81	+1.6
9,160	+				+0.4
9,179	-				+0.1
9,254	-				-0.8
9,551	-		GFF7391	0.24	-0.3
9,551	-		GFF7391	0.24	+0.2
9,580	+		GFF7391	0.27	-0.4
9,734	+		GFF7391	0.43	-0.4
9,735	+		GFF7391	0.43	-0.4
9,824	+		GFF7391	0.53	+0.2
9,825	-		GFF7391	0.53	-1.3
10,047	+		GFF7391	0.77	+1.2
10,048	-		GFF7391	0.77	+0.4
10,210	-				-1.3
10,236	+				-0.4
10,240	-				-0.1
10,248	+				-0.4
10,248	+				-0.5
10,249	-				-0.5
10,250	+				+0.0
10,253	-				-0.6