Strain Fitness in Variovorax sp. SCN45 around GFF7228

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
8,144	+		GFF7226	0.77	-0.4
8,144	+		GFF7226	0.77	-1.8
8,144	+		GFF7226	0.77	-2.0
8,145	-		GFF7226	0.77	-0.5
8,145	-		GFF7226	0.77	+0.5
8,145	-		GFF7226	0.77	-0.6
8,638	+				-1.3
8,639	-				-0.2
8,703	+				+2.4
8,704	-				-1.0
8,875	+				-1.0
8,875	+				-0.9
8,876	-				-1.0
9,127	+		GFF7228	0.18	-0.8
9,127	+		GFF7228	0.18	+0.3
9,128	-		GFF7228	0.18	-1.0
9,128	-		GFF7228	0.18	-0.0
9,537	-		GFF7228	0.40	+0.6
9,538	+		GFF7228	0.41	+1.2
9,539	-		GFF7228	0.41	-0.2
10,078	+		GFF7228	0.70	-0.4
10,079	-		GFF7228	0.70	+1.0
10,291	+		GFF7228	0.81	-0.8
10,292	-		GFF7228	0.81	-0.2
10,427	-		GFF7228	0.89	-0.6
10,478	-				-0.5
10,498	+				-1.2
10,498	+				-0.2
10,498	+				+0.4
10,498	+				-0.3
10,498	+				+0.2
10,498	+				-1.3
10,498	+				+0.5
10,498	+				-0.7
10,499	-				-0.3
10,499	-				+3.0
10,540	+				+1.6
10,541	-				+0.4
10,743	+				+0.8
10,743	+				-1.2
10,743	+				-0.0
10,744	-				-0.3