Strain Fitness in Variovorax sp. SCN45 around GFF7132

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7132 and GFF7133 are separated by 5 nucleotides GFF7132 - Xylose isomerase-like TIM-barrel protein KPN_00539, at 3 to 761 GFF7132 GFF7133 - Catalase-like heme-binding protein, at 767 to 1,852 GFF7133 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.047 kb on + strandat 0.047 kb on + strandat 0.047 kb on + strandat 0.047 kb on + strandat 0.055 kb on + strandat 0.141 kb on + strand, within GFF7132at 0.141 kb on + strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.259 kb on - strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.351 kb on + strand, within GFF7132at 0.351 kb on + strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.387 kb on + strand, within GFF7132at 0.387 kb on + strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.477 kb on + strand, within GFF7132at 0.477 kb on + strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.804 kb on + strandat 0.805 kb on - strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.823 kb on - strandat 0.823 kb on - strandat 0.823 kb on - strandat 0.823 kb on - strandat 1.197 kb on + strand, within GFF7133at 1.197 kb on + strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.206 kb on + strand, within GFF7133

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
remove
47 + -0.8
47 + -1.1
47 + +0.2
47 + -0.4
55 + -0.5
141 + GFF7132 0.18 +0.2
141 + GFF7132 0.18 +0.2
142 - GFF7132 0.18 +0.3
142 - GFF7132 0.18 -0.2
142 - GFF7132 0.18 +1.6
142 - GFF7132 0.18 -0.1
147 + GFF7132 0.19 +0.8
147 + GFF7132 0.19 +0.7
147 + GFF7132 0.19 +1.1
147 + GFF7132 0.19 +0.9
147 + GFF7132 0.19 -1.1
147 + GFF7132 0.19 -0.1
147 + GFF7132 0.19 +0.7
147 + GFF7132 0.19 +1.3
148 - GFF7132 0.19 -0.9
148 - GFF7132 0.19 -0.1
148 - GFF7132 0.19 -0.7
259 - GFF7132 0.34 -1.4
300 + GFF7132 0.39 +0.8
300 + GFF7132 0.39 +0.8
300 + GFF7132 0.39 +0.1
300 + GFF7132 0.39 -0.3
300 + GFF7132 0.39 -0.2
300 + GFF7132 0.39 +1.3
300 + GFF7132 0.39 -0.6
300 + GFF7132 0.39 -0.7
300 + GFF7132 0.39 -0.7
300 + GFF7132 0.39 +1.0
300 + GFF7132 0.39 +0.5
301 - GFF7132 0.39 +0.2
301 - GFF7132 0.39 -0.2
301 - GFF7132 0.39 +2.0
301 - GFF7132 0.39 +1.5
301 - GFF7132 0.39 -0.2
301 - GFF7132 0.39 -0.4
301 - GFF7132 0.39 -2.7
301 - GFF7132 0.39 -0.5
351 + GFF7132 0.46 -2.1
351 + GFF7132 0.46 -2.5
352 - GFF7132 0.46 -0.4
352 - GFF7132 0.46 +0.6
352 - GFF7132 0.46 +0.3
387 + GFF7132 0.51 -0.8
387 + GFF7132 0.51 +0.3
388 - GFF7132 0.51 -0.9
388 - GFF7132 0.51 -0.4
388 - GFF7132 0.51 +2.3
388 - GFF7132 0.51 -0.9
388 - GFF7132 0.51 +0.2
396 + GFF7132 0.52 +0.0
396 + GFF7132 0.52 +0.5
396 + GFF7132 0.52 -0.0
396 + GFF7132 0.52 +0.3
396 + GFF7132 0.52 -2.3
396 + GFF7132 0.52 -0.3
396 + GFF7132 0.52 +0.8
397 - GFF7132 0.52 +0.3
397 - GFF7132 0.52 +1.3
397 - GFF7132 0.52 +0.6
397 - GFF7132 0.52 -1.1
397 - GFF7132 0.52 -0.0
397 - GFF7132 0.52 +0.4
408 + GFF7132 0.53 +0.3
408 + GFF7132 0.53 -1.7
408 + GFF7132 0.53 +0.6
408 + GFF7132 0.53 -0.7
409 - GFF7132 0.53 -0.1
409 - GFF7132 0.53 -2.1
409 - GFF7132 0.53 +0.5
409 - GFF7132 0.53 +0.5
477 + GFF7132 0.62 +0.6
477 + GFF7132 0.62 -2.0
478 - GFF7132 0.63 -0.6
478 - GFF7132 0.63 +0.8
478 - GFF7132 0.63 -0.5
478 - GFF7132 0.63 +0.8
576 + GFF7132 0.75 -1.0
576 + GFF7132 0.75 +0.1
576 + GFF7132 0.75 -0.5
577 - GFF7132 0.76 +0.2
577 - GFF7132 0.76 +0.6
577 - GFF7132 0.76 +0.2
804 + +0.4
805 - -1.1
822 + +2.0
822 + +0.3
822 + +0.0
822 + -0.2
822 + -0.2
822 + +0.6
822 + -1.8
822 + -1.5
822 + -0.2
823 - -0.5
823 - +0.7
823 - -1.6
823 - +1.3
1,197 + GFF7133 0.40 -0.2
1,197 + GFF7133 0.40 -0.1
1,198 - GFF7133 0.40 -0.5
1,198 - GFF7133 0.40 +0.0
1,198 - GFF7133 0.40 -0.4
1,198 - GFF7133 0.40 -0.2
1,198 - GFF7133 0.40 -1.7
1,198 - GFF7133 0.40 +0.3
1,198 - GFF7133 0.40 -0.2
1,198 - GFF7133 0.40 +0.2
1,206 + GFF7133 0.40 +0.4

Or see this region's nucleotide sequence