Strain Fitness in Variovorax sp. SCN45 around GFF6736

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
46,701	+		GFF6735	0.47	+1.3
46,701	+		GFF6735	0.47	-0.6
46,701	+		GFF6735	0.47	+1.5
46,702	-		GFF6735	0.47	+0.1
46,702	-		GFF6735	0.47	-0.2
46,959	-		GFF6735	0.62	-1.3
46,981	+		GFF6735	0.63	-0.4
46,981	+		GFF6735	0.63	+0.2
46,981	+		GFF6735	0.63	-0.5
47,004	+		GFF6735	0.64	-0.0
47,005	-		GFF6735	0.64	-0.2
47,019	+		GFF6735	0.65	+0.8
47,020	-		GFF6735	0.65	-0.6
47,060	-		GFF6735	0.67	-0.5
47,060	-		GFF6735	0.67	-0.4
47,060	-		GFF6735	0.67	+0.6
47,060	-		GFF6735	0.67	-0.0
47,071	+		GFF6735	0.68	-0.4
47,071	+		GFF6735	0.68	+0.1
47,071	+		GFF6735	0.68	-0.6
47,071	+		GFF6735	0.68	-0.5
47,071	+		GFF6735	0.68	-1.6
47,071	+		GFF6735	0.68	+0.4
47,071	+		GFF6735	0.68	+0.1
47,072	-		GFF6735	0.68	-0.6
47,072	-		GFF6735	0.68	-0.2
47,072	-		GFF6735	0.68	-0.1
47,072	-		GFF6735	0.68	+0.2
47,073	+		GFF6735	0.68	-1.0
47,074	-		GFF6735	0.68	+1.2
47,074	-		GFF6735	0.68	+1.1
47,074	-		GFF6735	0.68	+0.5
47,171	+		GFF6735	0.74	-0.4
47,171	+		GFF6735	0.74	+2.1
47,172	-		GFF6735	0.74	-0.2
47,237	-		GFF6735	0.78	+1.1
47,349	-		GFF6735	0.84	-0.6
47,434	+		GFF6735	0.89	-0.3
47,455	+				-0.2
47,456	-				+1.1
47,456	-				+1.1
47,456	-				-0.2
47,456	-				-0.0
47,456	-				+0.5
47,515	+				-0.5
47,554	+				-0.3
47,555	-				-0.2
47,555	-				-0.1
47,628	+				+0.4
47,628	+				+0.5
47,629	-				+0.1
47,629	-				-2.3
47,629	-				-0.2
47,670	+				-0.2
47,718	+				+0.5
47,718	+				-0.4
47,718	+				-0.5
47,718	+				+0.6
47,719	-				+0.7
47,719	-				-0.1
47,719	-				-0.7
47,719	-				-0.6
47,757	+				-0.1
47,757	+				+1.1
47,757	+				+0.4
47,757	+				+0.8
47,757	+				+0.5
47,758	-				-0.7
47,758	-				-0.6
47,758	-				-0.3
47,758	-				+1.3
47,758	-				-0.7
47,859	+		GFF6736	0.11	+0.1
47,927	+		GFF6736	0.15	-1.3
47,928	-		GFF6736	0.15	-0.4
48,078	+		GFF6736	0.24	+0.3
48,252	+		GFF6736	0.35	-1.0
48,442	-		GFF6736	0.46	+0.5
49,179	+		GFF6736	0.90	+0.2
49,179	+		GFF6736	0.90	-1.0
49,179	+		GFF6736	0.90	-0.7
49,245	+				-1.6
49,246	-				-0.0
49,246	-				+0.1
49,246	-				-0.5
49,246	-				-0.2
49,246	-				-0.8
49,520	-				-1.6
49,575	+				-0.3
49,576	-				-1.6
49,576	-				+0.8
49,576	-				+0.6
49,582	-				-0.2
49,902	-		GFF6737	0.66	-1.7
49,902	-		GFF6737	0.66	+3.1
49,935	-		GFF6737	0.73	-0.6
49,971	+		GFF6737	0.80	-0.6
49,971	+		GFF6737	0.80	-1.1
49,972	-		GFF6737	0.80	-1.2
49,975	+		GFF6737	0.81	+0.7
49,975	+		GFF6737	0.81	-1.1
49,975	+		GFF6737	0.81	+0.0
49,976	-		GFF6737	0.81	-0.5
50,310	+		GFF6738	0.11	-0.6
50,310	+		GFF6738	0.11	-0.7
50,310	+		GFF6738	0.11	+2.7
50,311	-		GFF6738	0.11	-1.4
50,311	-		GFF6738	0.11	+0.5
50,311	-		GFF6738	0.11	+0.1
50,311	-		GFF6738	0.11	-0.5