Strain Fitness in Variovorax sp. SCN45 around GFF6635

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
7,584	+		GFF6634	0.67	-0.4
7,584	+		GFF6634	0.67	-0.6
7,585	-		GFF6634	0.67	-1.4
7,585	-		GFF6634	0.67	+0.2
7,585	-		GFF6634	0.67	-0.1
7,585	-		GFF6634	0.67	-0.6
7,585	-		GFF6634	0.67	-0.5
7,585	-		GFF6634	0.67	-0.3
7,720	+		GFF6634	0.72	+0.4
7,720	+		GFF6634	0.72	+0.5
7,720	+		GFF6634	0.72	-0.5
7,720	+		GFF6634	0.72	-0.7
7,720	+		GFF6634	0.72	+0.7
7,721	-		GFF6634	0.72	-1.0
7,730	+		GFF6634	0.73	-0.2
7,730	+		GFF6634	0.73	-0.8
7,730	+		GFF6634	0.73	-0.6
7,730	+		GFF6634	0.73	+0.1
7,730	+		GFF6634	0.73	-0.4
7,730	+		GFF6634	0.73	-0.1
7,730	+		GFF6634	0.73	-0.5
7,730	+		GFF6634	0.73	-0.1
7,730	+		GFF6634	0.73	+0.3
7,730	+		GFF6634	0.73	-0.2
7,731	-		GFF6634	0.73	+0.1
7,731	-		GFF6634	0.73	-0.0
7,731	-		GFF6634	0.73	-0.3
7,731	-		GFF6634	0.73	-1.0
7,731	-		GFF6634	0.73	-0.1
7,731	-		GFF6634	0.73	-1.5
7,731	-		GFF6634	0.73	-1.6
7,731	-		GFF6634	0.73	-0.1
7,731	-		GFF6634	0.73	+1.1
7,731	-		GFF6634	0.73	-0.7
7,731	-		GFF6634	0.73	+0.3
8,048	+		GFF6634	0.85	-0.0
8,048	+		GFF6634	0.85	-0.7
8,048	+		GFF6634	0.85	-0.5
8,048	+		GFF6634	0.85	+0.1
8,048	+		GFF6634	0.85	-0.5
8,048	+		GFF6634	0.85	-0.7
8,048	+		GFF6634	0.85	-0.0
8,049	+		GFF6634	0.85	+0.5
8,049	-		GFF6634	0.85	+1.0
8,049	-		GFF6634	0.85	+0.1
8,049	-		GFF6634	0.85	-1.3
8,174	+		GFF6634	0.90	-0.4
8,174	+		GFF6634	0.90	-1.1
8,174	+		GFF6634	0.90	-0.1
8,174	+		GFF6634	0.90	-0.8
8,174	+		GFF6634	0.90	-0.1
8,174	+		GFF6634	0.90	+0.6
8,174	+		GFF6634	0.90	+1.3
8,175	-		GFF6634	0.90	-1.6
8,175	-		GFF6634	0.90	+0.0
8,175	-		GFF6634	0.90	-0.2
8,175	-		GFF6634	0.90	-0.0
8,175	-		GFF6634	0.90	+0.9
8,334	+				-1.0
8,334	+				-1.2
8,334	+				-0.6
8,334	+				+1.3
8,334	+				-0.5
8,335	-				-0.1
8,335	-				-0.3
8,335	-				+0.9
8,399	+				-0.1
8,399	+				+0.7
8,399	+				-0.1
8,399	+				-1.1
8,399	+				+0.3
8,399	+				-0.7
8,399	+				-3.4
8,399	+				+0.4
8,400	-				+0.1
8,400	-				+0.3
8,400	-				-1.6
8,400	-				+0.2
8,400	-				-1.1
8,400	-				-0.7
8,400	-				+1.0
8,400	-				-0.6
8,400	-				-0.5
8,400	-				-1.7
8,400	-				+0.1
8,478	+				-1.3
8,478	+				+0.1
8,478	+				+1.4
8,478	+				-0.3
8,478	+				+0.4
8,478	+				-0.3
8,479	-				-0.0
8,479	-				-0.5
8,479	-				+0.0
8,479	-				+0.1
8,479	-				+0.0
8,479	-				-1.6
8,485	+				-1.0
8,485	+				+1.6
8,485	+				-0.9
8,485	+				-0.1
8,485	+				-0.4
8,486	-				-0.6
8,486	-				+0.3
8,486	-				-0.6
8,486	-				-0.2
8,486	-				+0.2
8,486	-				-1.0
8,486	-				+0.0
8,486	-				-0.8
8,486	-				+0.9
8,580	+		GFF6635	0.13	-0.6
8,580	+		GFF6635	0.13	+0.6
8,581	-		GFF6635	0.13	+0.1
8,781	+		GFF6635	0.37	-1.1
8,781	+		GFF6635	0.37	-0.1
8,781	+		GFF6635	0.37	-0.1
8,782	-		GFF6635	0.37	+0.1
8,782	-		GFF6635	0.37	-0.5
8,782	-		GFF6635	0.37	+0.5
8,782	-		GFF6635	0.37	-1.6
8,782	-		GFF6635	0.37	-0.3
8,886	+		GFF6635	0.49	-0.3
8,886	+		GFF6635	0.49	-1.5
8,886	+		GFF6635	0.49	+0.4
8,886	+		GFF6635	0.49	-0.4
8,887	-		GFF6635	0.49	-0.7
8,887	-		GFF6635	0.49	+0.9
8,887	-		GFF6635	0.49	+0.7
8,887	-		GFF6635	0.49	-1.1
8,887	-		GFF6635	0.49	+1.3
8,928	+		GFF6635	0.54	-2.5
8,928	+		GFF6635	0.54	-0.0
8,928	+		GFF6635	0.54	-0.9
8,928	+		GFF6635	0.54	-1.0
8,929	-		GFF6635	0.54	-0.6
8,929	-		GFF6635	0.54	+0.4
8,929	-		GFF6635	0.54	+0.2
8,929	-		GFF6635	0.54	+0.2
8,929	-		GFF6635	0.54	+0.0
8,929	-		GFF6635	0.54	-2.2
8,929	-		GFF6635	0.54	-0.7
8,952	+		GFF6635	0.57	+1.1
8,953	-		GFF6635	0.57	+0.0
8,953	-		GFF6635	0.57	+0.5
8,953	-		GFF6635	0.57	-0.8
8,953	-		GFF6635	0.57	+0.7
9,087	+		GFF6635	0.73	-0.7
9,087	+		GFF6635	0.73	-0.1
9,087	+		GFF6635	0.73	+0.1
9,087	+		GFF6635	0.73	-1.6
9,087	+		GFF6635	0.73	-1.0
9,087	+		GFF6635	0.73	+0.3
9,087	+		GFF6635	0.73	+0.4
9,087	+		GFF6635	0.73	-0.8
9,087	+		GFF6635	0.73	+0.5
9,088	-		GFF6635	0.73	+1.0
9,088	-		GFF6635	0.73	-0.2
9,088	-		GFF6635	0.73	-0.7
9,088	-		GFF6635	0.73	+1.0
9,088	-		GFF6635	0.73	-0.7
9,088	-		GFF6635	0.73	-0.4
9,088	-		GFF6635	0.73	+0.8
9,088	-		GFF6635	0.73	-0.5
9,088	-		GFF6635	0.73	-0.1
9,144	+		GFF6635	0.80	+1.3
9,144	+		GFF6635	0.80	-0.5
9,144	+		GFF6635	0.80	-0.2
9,145	-		GFF6635	0.80	-1.8
9,145	-		GFF6635	0.80	-0.9
9,147	+		GFF6635	0.80	+1.2
9,148	-		GFF6635	0.80	+0.3
9,148	-		GFF6635	0.80	+2.4
9,148	-		GFF6635	0.80	+0.4
9,148	-		GFF6635	0.80	+0.9
9,230	+				-1.3
9,230	+				+1.4
9,231	-				+0.2
9,365	+				+0.7
9,365	+				-0.5
9,365	+				-1.3
9,443	+		GFF6636	0.16	-1.6
9,443	+		GFF6636	0.16	-1.6
9,444	-		GFF6636	0.16	-0.6
9,444	-		GFF6636	0.16	-0.4
9,809	+		GFF6636	0.61	-0.0
9,809	+		GFF6636	0.61	-1.4
9,810	-		GFF6636	0.62	+0.4
9,810	-		GFF6636	0.62	-1.3
9,810	-		GFF6636	0.62	-0.0
9,810	-		GFF6636	0.62	-0.1
9,810	-		GFF6636	0.62	-0.3
9,810	-		GFF6636	0.62	+0.5
9,810	-		GFF6636	0.62	-0.4
9,884	+		GFF6636	0.71	-0.2
9,884	+		GFF6636	0.71	+0.5
9,884	+		GFF6636	0.71	-0.8
9,884	+		GFF6636	0.71	-1.0
9,884	+		GFF6636	0.71	-1.2
9,884	+		GFF6636	0.71	-1.1
9,884	+		GFF6636	0.71	-0.4
9,884	+		GFF6636	0.71	+0.2
9,884	+		GFF6636	0.71	-1.0
9,884	+		GFF6636	0.71	-0.4
9,884	+		GFF6636	0.71	-0.6
9,884	+		GFF6636	0.71	-0.7
9,884	+		GFF6636	0.71	+0.1
9,884	+		GFF6636	0.71	-0.2
9,884	+		GFF6636	0.71	-0.6
9,885	-		GFF6636	0.71	-0.7
9,885	-		GFF6636	0.71	-1.1
9,885	-		GFF6636	0.71	-0.1
9,885	-		GFF6636	0.71	-1.2
9,885	-		GFF6636	0.71	-1.1
9,885	-		GFF6636	0.71	-0.1
9,885	-		GFF6636	0.71	+0.5
9,885	-		GFF6636	0.71	+1.4
9,885	-		GFF6636	0.71	+0.1
9,885	-		GFF6636	0.71	+0.3
9,885	-		GFF6636	0.71	-0.3