Strain Fitness in Variovorax sp. SCN45 around GFF6255

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
47,980	+		GFF6254	0.13	-0.6
47,981	-		GFF6254	0.13	-0.5
48,070	+		GFF6254	0.23	-0.9
48,070	+		GFF6254	0.23	+0.4
48,071	-		GFF6254	0.23	-0.2
49,075	+		GFF6255	0.21	-0.5
49,075	+		GFF6255	0.21	+0.3
49,327	+		GFF6255	0.43	-0.8
49,361	-		GFF6255	0.46	+0.1
49,407	-		GFF6255	0.50	-0.4
49,435	+		GFF6255	0.52	-1.3
49,436	-		GFF6255	0.52	-0.1
49,438	+		GFF6255	0.52	-2.1
49,438	+		GFF6255	0.52	-0.5
49,438	+		GFF6255	0.52	-0.3
49,438	+		GFF6255	0.52	-0.6
49,438	+		GFF6255	0.52	-0.1
49,438	+		GFF6255	0.52	+0.4
49,438	+		GFF6255	0.52	+0.2
49,439	-		GFF6255	0.52	-0.3
49,439	-		GFF6255	0.52	+0.7
49,439	-		GFF6255	0.52	-0.0
49,439	-		GFF6255	0.52	-1.0
49,439	-		GFF6255	0.52	-0.7
49,447	-		GFF6255	0.53	-1.8
49,462	+		GFF6255	0.54	-0.0
50,451	-		GFF6256	0.65	-0.4
50,451	-		GFF6256	0.65	-0.8
50,514	+		GFF6256	0.74	-0.6
50,515	-		GFF6256	0.74	+0.7
50,523	+		GFF6256	0.75	+1.1
50,523	+		GFF6256	0.75	-3.0
50,523	+		GFF6256	0.75	-0.6
50,625	-		GFF6256	0.90	-0.6
50,732	+				+0.9
50,732	+				+1.8
50,732	+				-0.5
50,733	-				-0.6