Strain Fitness in Variovorax sp. SCN45 around GFF6142

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6141 and GFF6142 are separated by 41 nucleotidesGFF6142 and GFF6143 overlap by 4 nucleotides GFF6141 - 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37), at 44,118 to 45,248 GFF6141 GFF6142 - 2-aminoethylphosphonate ABC transporter permease protein, at 45,290 to 47,023 GFF6142 GFF6143 - 2-aminoethylphosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1), at 47,020 to 48,156 GFF6143 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 44.299 kb on + strand, within GFF6141at 44.300 kb on - strand, within GFF6141at 44.317 kb on + strand, within GFF6141at 44.317 kb on + strand, within GFF6141at 44.437 kb on + strand, within GFF6141at 44.476 kb on + strand, within GFF6141at 44.476 kb on + strand, within GFF6141at 44.477 kb on - strand, within GFF6141at 44.477 kb on - strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.570 kb on - strand, within GFF6141at 44.915 kb on - strand, within GFF6141at 44.915 kb on - strand, within GFF6141at 44.975 kb on - strand, within GFF6141at 45.477 kb on + strand, within GFF6142at 45.525 kb on + strand, within GFF6142at 45.525 kb on + strand, within GFF6142at 45.678 kb on + strand, within GFF6142at 45.679 kb on - strand, within GFF6142at 45.679 kb on - strand, within GFF6142at 45.679 kb on - strand, within GFF6142at 45.681 kb on + strand, within GFF6142at 45.681 kb on + strand, within GFF6142at 45.682 kb on - strand, within GFF6142at 45.682 kb on - strand, within GFF6142at 45.871 kb on - strand, within GFF6142at 46.006 kb on - strand, within GFF6142at 46.032 kb on + strand, within GFF6142at 46.129 kb on - strand, within GFF6142at 46.179 kb on + strand, within GFF6142at 46.180 kb on - strand, within GFF6142at 46.341 kb on + strand, within GFF6142at 46.341 kb on + strand, within GFF6142at 46.342 kb on - strand, within GFF6142at 46.377 kb on + strand, within GFF6142at 46.450 kb on - strand, within GFF6142at 46.515 kb on + strand, within GFF6142at 46.548 kb on + strand, within GFF6142at 46.548 kb on + strand, within GFF6142at 46.549 kb on - strand, within GFF6142at 46.711 kb on - strand, within GFF6142at 46.809 kb on + strand, within GFF6142at 46.810 kb on - strand, within GFF6142at 47.282 kb on + strand, within GFF6143at 47.441 kb on + strand, within GFF6143at 47.441 kb on + strand, within GFF6143at 47.442 kb on - strand, within GFF6143at 47.717 kb on + strand, within GFF6143at 47.718 kb on - strand, within GFF6143at 47.718 kb on - strand, within GFF6143at 47.855 kb on + strand, within GFF6143at 47.855 kb on + strand, within GFF6143

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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44,299 + GFF6141 0.16 +2.4
44,300 - GFF6141 0.16 -0.3
44,317 + GFF6141 0.18 +0.5
44,317 + GFF6141 0.18 -0.6
44,437 + GFF6141 0.28 +2.4
44,476 + GFF6141 0.32 -0.3
44,476 + GFF6141 0.32 -0.2
44,477 - GFF6141 0.32 -1.0
44,477 - GFF6141 0.32 -0.2
44,554 + GFF6141 0.39 -0.2
44,554 + GFF6141 0.39 +0.1
44,554 + GFF6141 0.39 -0.2
44,554 + GFF6141 0.39 -0.6
44,555 - GFF6141 0.39 +0.5
44,555 - GFF6141 0.39 -0.2
44,555 - GFF6141 0.39 -1.4
44,555 - GFF6141 0.39 -0.2
44,570 - GFF6141 0.40 -1.2
44,915 - GFF6141 0.70 -0.5
44,915 - GFF6141 0.70 +0.5
44,975 - GFF6141 0.76 +0.3
45,477 + GFF6142 0.11 +0.6
45,525 + GFF6142 0.14 -0.8
45,525 + GFF6142 0.14 -1.0
45,678 + GFF6142 0.22 -1.7
45,679 - GFF6142 0.22 -0.2
45,679 - GFF6142 0.22 -1.4
45,679 - GFF6142 0.22 -0.3
45,681 + GFF6142 0.23 -0.3
45,681 + GFF6142 0.23 -0.3
45,682 - GFF6142 0.23 -0.6
45,682 - GFF6142 0.23 -1.2
45,871 - GFF6142 0.34 -1.2
46,006 - GFF6142 0.41 -1.8
46,032 + GFF6142 0.43 -1.1
46,129 - GFF6142 0.48 -0.3
46,179 + GFF6142 0.51 +0.4
46,180 - GFF6142 0.51 +0.7
46,341 + GFF6142 0.61 -0.8
46,341 + GFF6142 0.61 -0.4
46,342 - GFF6142 0.61 -0.6
46,377 + GFF6142 0.63 -0.7
46,450 - GFF6142 0.67 -0.7
46,515 + GFF6142 0.71 -0.9
46,548 + GFF6142 0.73 -0.1
46,548 + GFF6142 0.73 -1.0
46,549 - GFF6142 0.73 -1.5
46,711 - GFF6142 0.82 +2.6
46,809 + GFF6142 0.88 +0.2
46,810 - GFF6142 0.88 -0.4
47,282 + GFF6143 0.23 -1.4
47,441 + GFF6143 0.37 +0.6
47,441 + GFF6143 0.37 +1.4
47,442 - GFF6143 0.37 +0.7
47,717 + GFF6143 0.61 +0.5
47,718 - GFF6143 0.61 -1.5
47,718 - GFF6143 0.61 -0.0
47,855 + GFF6143 0.73 -0.6
47,855 + GFF6143 0.73 +2.2

Or see this region's nucleotide sequence