Strain Fitness in Variovorax sp. SCN45 around GFF6080

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
141,155	+		GFF6078	0.71	-0.5
141,155	+		GFF6078	0.71	-0.1
141,156	-		GFF6078	0.71	-0.7
141,275	+		GFF6078	0.86	-1.1
141,275	+		GFF6078	0.86	+0.3
141,276	-		GFF6078	0.86	+0.3
141,276	-		GFF6078	0.86	-0.1
141,276	-		GFF6078	0.86	+0.5
141,393	+				-0.9
141,393	+				-0.6
141,394	-				+1.9
141,437	+				-0.4
141,437	+				-1.6
141,437	+				+0.9
141,437	+				+1.1
141,437	+				+0.2
141,437	+				-1.3
141,437	+				+0.1
141,437	+				-0.2
141,437	+				+1.6
141,437	+				+0.1
141,438	-				-0.5
141,438	-				-0.3
141,438	-				-1.0
141,438	-				-0.1
141,438	-				-0.8
141,438	-				+0.2
141,438	-				-0.1
141,438	-				-1.1
141,438	-				-0.5
141,544	+				-0.5
141,544	+				-0.3
141,545	-				-0.4
141,545	-				+0.3
141,545	-				-0.9
141,545	-				-1.3
141,555	-				-0.7
141,558	+				+0.3
141,558	+				+0.0
141,558	+				+0.3
141,558	+				-0.4
141,558	+				-0.7
141,558	+				-0.5
141,558	+				+0.5
141,558	+				-0.4
141,558	+				+0.3
141,558	+				-0.6
141,558	+				-1.2
141,559	-				-1.0
141,559	-				-0.1
141,559	-				+0.0
141,559	-				+0.1
141,559	-				-0.5
141,559	-				+1.1
141,559	-				+0.1
141,559	-				-0.4
141,801	+		GFF6079	0.57	+0.0
141,801	+		GFF6079	0.57	-0.2
141,801	+		GFF6079	0.57	-1.5
141,802	-		GFF6079	0.58	+0.0
141,802	-		GFF6079	0.58	+0.6
141,802	-		GFF6079	0.58	-0.7
141,802	-		GFF6079	0.58	-0.7
141,802	-		GFF6079	0.58	-0.4
142,009	+				+0.3
142,009	+				-1.4
142,035	+				-0.6
142,035	+				-0.7
142,036	-				-1.2
142,047	-				-0.8
142,047	-				+0.9
142,115	+				+1.2
142,115	+				+0.7
142,115	+				-0.3
142,116	-				-1.6
142,159	+				+0.8
142,319	+		GFF6080	0.24	-0.5
142,320	-		GFF6080	0.24	-0.1
142,585	+		GFF6080	0.55	+0.3
142,585	+		GFF6080	0.55	+0.6
142,585	+		GFF6080	0.55	+0.2
142,586	-		GFF6080	0.55	-2.9
142,586	-		GFF6080	0.55	+1.1
142,586	-		GFF6080	0.55	-0.1
142,670	+		GFF6080	0.65	+0.1
142,671	-		GFF6080	0.65	+0.3
142,671	-		GFF6080	0.65	-0.0
142,671	-		GFF6080	0.65	-0.8
142,799	+		GFF6080	0.80	+0.4
142,799	+		GFF6080	0.80	+0.7
142,906	+				-0.6
142,906	+				-0.3
142,969	-				-0.1
142,969	-				+0.1
143,019	+				-1.8
143,019	+				-0.6
143,019	+				+0.2
143,020	-				+0.1
143,041	+				+1.7
143,081	+				-0.6
143,081	+				+0.2
143,082	-				-0.5
143,435	+		GFF6081	0.36	-0.5
143,435	+		GFF6081	0.36	+0.4
143,435	+		GFF6081	0.36	-0.9
143,436	-		GFF6081	0.37	-0.5