Strain Fitness in Variovorax sp. SCN45 around GFF5967

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
20,452	+		GFF5966	0.60	+0.5
20,452	+		GFF5966	0.60	+0.5
20,452	+		GFF5966	0.60	-1.5
20,453	-		GFF5966	0.60	-1.1
20,455	+		GFF5966	0.60	+1.3
20,456	-		GFF5966	0.60	+0.4
20,543	-		GFF5966	0.64	+0.8
21,534	+				+0.8
21,535	-				-0.3
22,296	+		GFF5967	0.63	-0.4
22,296	+		GFF5967	0.63	-0.3
22,297	-		GFF5967	0.63	-0.5
22,297	-		GFF5967	0.63	+0.2
22,308	+		GFF5967	0.64	+0.8
22,338	+		GFF5967	0.66	-1.2
22,338	+		GFF5967	0.66	+0.7
22,338	+		GFF5967	0.66	-0.3
22,338	+		GFF5967	0.66	-0.5
22,338	+		GFF5967	0.66	-0.7
22,339	-		GFF5967	0.66	-0.1
22,339	-		GFF5967	0.66	-0.9
22,339	-		GFF5967	0.66	-0.1
22,339	-		GFF5967	0.66	-0.5
22,339	-		GFF5967	0.66	-1.0
22,392	+		GFF5967	0.70	+1.5
22,392	+		GFF5967	0.70	-0.7
22,815	+				-0.8
22,815	+				-0.5
22,816	-				-0.7
22,816	-				-0.4
22,825	+				-0.9
22,826	-				-1.1
22,826	-				-0.0
22,826	-				-0.3
22,826	-				+1.5
22,826	-				-2.2
22,826	-				-0.4
22,826	-				-0.3
22,852	+				-0.1
22,852	+				-0.1
22,853	-				-1.0
22,853	-				+0.2
22,900	+				-1.0
22,900	+				+0.5
22,900	+				-0.5
22,900	+				-0.1
22,900	+				-1.2
22,901	-				+0.7
22,901	-				-0.7
23,200	+		GFF5968	0.42	-1.2
23,200	+		GFF5968	0.42	+1.4
23,201	-		GFF5968	0.42	-1.6
23,201	-		GFF5968	0.42	-0.2
23,201	-		GFF5968	0.42	+1.1
23,407	+		GFF5968	0.65	+0.4
23,407	+		GFF5968	0.65	-0.9
23,410	+		GFF5968	0.66	-0.3
23,410	+		GFF5968	0.66	+0.7
23,410	+		GFF5968	0.66	-0.5
23,410	+		GFF5968	0.66	-0.5
23,410	+		GFF5968	0.66	-0.2
23,411	-		GFF5968	0.66	-0.7
23,411	-		GFF5968	0.66	-0.3
23,411	-		GFF5968	0.66	-0.4
23,411	-		GFF5968	0.66	-0.9
23,411	-		GFF5968	0.66	+0.9
23,411	-		GFF5968	0.66	-0.1
23,628	+				-0.7
23,628	+				+0.1
23,628	+				-0.5
23,628	+				+0.2
23,628	+				-0.2
23,628	+				-2.2
23,629	-				-1.1
23,629	-				+0.2
23,629	-				-2.0
23,629	-				-0.2