Strain Fitness in Variovorax sp. SCN45 around GFF5648

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5646 and GFF5647 overlap by 4 nucleotidesGFF5647 and GFF5648 are separated by 10 nucleotidesGFF5648 and GFF5649 are separated by 74 nucleotides GFF5646 - ABC transporter, permease protein (cluster 12, methionine/phosphonates) / ABC transporter, permease protein (cluster 12, methionine/phosphonates), at 21,198 to 22,037 GFF5646 GFF5647 - ABC transporter, ATP-binding protein (cluster 12, methionine/phosphonates), at 22,034 to 22,846 GFF5647 GFF5648 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 22,857 to 23,717 GFF5648 GFF5649 - Selenide,water dikinase (EC 2.7.9.3), at 23,792 to 24,859 GFF5649 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1 2at 22.119 kb on + strand, within GFF5647at 22.119 kb on + strand, within GFF5647at 22.119 kb on + strand, within GFF5647at 22.120 kb on - strand, within GFF5647at 22.362 kb on + strand, within GFF5647at 22.363 kb on - strand, within GFF5647at 22.363 kb on - strand, within GFF5647at 22.363 kb on - strand, within GFF5647at 22.363 kb on - strand, within GFF5647at 22.903 kb on + strandat 22.903 kb on + strandat 22.903 kb on + strandat 22.903 kb on + strandat 22.903 kb on + strandat 22.903 kb on + strandat 22.904 kb on - strandat 22.904 kb on - strandat 22.904 kb on - strandat 23.053 kb on + strand, within GFF5648at 23.053 kb on + strand, within GFF5648at 23.053 kb on + strand, within GFF5648at 23.054 kb on - strand, within GFF5648at 23.054 kb on - strand, within GFF5648at 23.059 kb on + strand, within GFF5648at 23.059 kb on + strand, within GFF5648at 23.059 kb on + strand, within GFF5648at 23.059 kb on + strand, within GFF5648at 23.060 kb on - strand, within GFF5648at 23.060 kb on - strand, within GFF5648at 23.060 kb on - strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.062 kb on + strand, within GFF5648at 23.063 kb on - strand, within GFF5648at 23.063 kb on - strand, within GFF5648at 23.063 kb on - strand, within GFF5648at 23.063 kb on - strand, within GFF5648at 23.063 kb on - strand, within GFF5648at 23.264 kb on - strand, within GFF5648at 23.264 kb on - strand, within GFF5648at 23.566 kb on + strand, within GFF5648at 23.566 kb on + strand, within GFF5648at 23.743 kb on + strandat 23.761 kb on + strandat 23.761 kb on + strandat 23.761 kb on + strandat 23.762 kb on - strandat 23.762 kb on - strandat 23.762 kb on - strandat 23.972 kb on + strand, within GFF5649at 23.972 kb on + strand, within GFF5649at 23.973 kb on - strand, within GFF5649at 24.041 kb on + strand, within GFF5649at 24.042 kb on - strand, within GFF5649at 24.086 kb on + strand, within GFF5649at 24.086 kb on + strand, within GFF5649at 24.086 kb on + strand, within GFF5649at 24.086 kb on + strand, within GFF5649at 24.087 kb on - strand, within GFF5649at 24.087 kb on - strand, within GFF5649at 24.087 kb on - strand, within GFF5649at 24.087 kb on - strand, within GFF5649at 24.254 kb on + strand, within GFF5649at 24.255 kb on - strand, within GFF5649at 24.255 kb on - strand, within GFF5649at 24.255 kb on - strand, within GFF5649

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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22,119 + GFF5647 0.10 +0.1
22,119 + GFF5647 0.10 +0.9
22,119 + GFF5647 0.10 -0.4
22,120 - GFF5647 0.11 -0.7
22,362 + GFF5647 0.40 -0.4
22,363 - GFF5647 0.40 +0.1
22,363 - GFF5647 0.40 +0.6
22,363 - GFF5647 0.40 -0.1
22,363 - GFF5647 0.40 -0.1
22,903 + +0.0
22,903 + -1.6
22,903 + -0.1
22,903 + +2.5
22,903 + -0.0
22,903 + -1.1
22,904 - -1.0
22,904 - -0.6
22,904 - +2.4
23,053 + GFF5648 0.23 +1.5
23,053 + GFF5648 0.23 -0.5
23,053 + GFF5648 0.23 -0.5
23,054 - GFF5648 0.23 -0.9
23,054 - GFF5648 0.23 +0.4
23,059 + GFF5648 0.23 +1.1
23,059 + GFF5648 0.23 -0.6
23,059 + GFF5648 0.23 +0.9
23,059 + GFF5648 0.23 -0.4
23,060 - GFF5648 0.24 -0.3
23,060 - GFF5648 0.24 +0.9
23,060 - GFF5648 0.24 -0.2
23,062 + GFF5648 0.24 -0.4
23,062 + GFF5648 0.24 +1.1
23,062 + GFF5648 0.24 +1.0
23,062 + GFF5648 0.24 -0.1
23,062 + GFF5648 0.24 -1.0
23,062 + GFF5648 0.24 +0.3
23,062 + GFF5648 0.24 -0.2
23,062 + GFF5648 0.24 -0.6
23,063 - GFF5648 0.24 +0.7
23,063 - GFF5648 0.24 +0.3
23,063 - GFF5648 0.24 +0.5
23,063 - GFF5648 0.24 +1.6
23,063 - GFF5648 0.24 -1.0
23,264 - GFF5648 0.47 -0.6
23,264 - GFF5648 0.47 -0.5
23,566 + GFF5648 0.82 +0.5
23,566 + GFF5648 0.82 -1.3
23,743 + +0.5
23,761 + -0.9
23,761 + -0.1
23,761 + -0.3
23,762 - -0.4
23,762 - -0.9
23,762 - -1.3
23,972 + GFF5649 0.17 -0.3
23,972 + GFF5649 0.17 +0.3
23,973 - GFF5649 0.17 -1.6
24,041 + GFF5649 0.23 +0.7
24,042 - GFF5649 0.23 -0.1
24,086 + GFF5649 0.28 -0.6
24,086 + GFF5649 0.28 -1.5
24,086 + GFF5649 0.28 +0.6
24,086 + GFF5649 0.28 +0.3
24,087 - GFF5649 0.28 +0.7
24,087 - GFF5649 0.28 -0.1
24,087 - GFF5649 0.28 -0.2
24,087 - GFF5649 0.28 -0.5
24,254 + GFF5649 0.43 +0.5
24,255 - GFF5649 0.43 -1.5
24,255 - GFF5649 0.43 -0.5
24,255 - GFF5649 0.43 -0.4

Or see this region's nucleotide sequence