Strain Fitness in Variovorax sp. SCN45 around GFF5585

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5584 and GFF5585 are separated by 129 nucleotidesGFF5585 and GFF5586 are separated by 23 nucleotidesGFF5586 and GFF5587 overlap by 10 nucleotides GFF5584 - Cyclic-di-GMP-binding biofilm dispersal mediator protein, at 205,258 to 206,142 GFF5584 GFF5585 - Transcriptional regulator, MarR family, at 206,272 to 206,694 GFF5585 GFF5586 - Acetoin dehydrogenase E1 component beta-subunit (EC 2.3.1.190), at 206,718 to 207,686 GFF5586 GFF5587 - Acetoin dehydrogenase E1 component alpha-subunit (EC 2.3.1.190), at 207,677 to 208,693 GFF5587 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.507 kb on + strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.508 kb on - strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.864 kb on + strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 205.865 kb on - strand, within GFF5584at 206.071 kb on + strandat 206.071 kb on + strandat 206.071 kb on + strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.072 kb on - strandat 206.308 kb on + strandat 206.309 kb on - strandat 206.426 kb on + strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.427 kb on - strand, within GFF5585at 206.575 kb on + strand, within GFF5585at 206.575 kb on + strand, within GFF5585at 206.576 kb on - strand, within GFF5585at 206.794 kb on + strandat 206.794 kb on + strandat 206.794 kb on + strandat 206.795 kb on - strandat 206.795 kb on - strandat 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.169 kb on + strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.170 kb on - strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.240 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.556 kb on + strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.557 kb on - strand, within GFF5586at 207.658 kb on + strandat 207.658 kb on + strandat 207.658 kb on + strandat 207.659 kb on - strandat 207.659 kb on - strandat 207.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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205,507 + GFF5584 0.28 -0.9
205,507 + GFF5584 0.28 -1.1
205,507 + GFF5584 0.28 -0.2
205,507 + GFF5584 0.28 -0.4
205,507 + GFF5584 0.28 -0.7
205,507 + GFF5584 0.28 +0.6
205,507 + GFF5584 0.28 -0.2
205,507 + GFF5584 0.28 +0.7
205,507 + GFF5584 0.28 +0.2
205,508 - GFF5584 0.28 +1.0
205,508 - GFF5584 0.28 -0.6
205,508 - GFF5584 0.28 -0.2
205,508 - GFF5584 0.28 -0.6
205,508 - GFF5584 0.28 -1.1
205,508 - GFF5584 0.28 -0.2
205,508 - GFF5584 0.28 -0.4
205,508 - GFF5584 0.28 -1.0
205,508 - GFF5584 0.28 -0.4
205,508 - GFF5584 0.28 -0.2
205,508 - GFF5584 0.28 -0.5
205,508 - GFF5584 0.28 -1.0
205,508 - GFF5584 0.28 +2.4
205,864 + GFF5584 0.68 -1.8
205,864 + GFF5584 0.68 -1.8
205,864 + GFF5584 0.68 +0.2
205,864 + GFF5584 0.68 +0.1
205,864 + GFF5584 0.68 +0.1
205,864 + GFF5584 0.68 +0.4
205,864 + GFF5584 0.68 +0.1
205,864 + GFF5584 0.68 -0.4
205,864 + GFF5584 0.68 -1.4
205,864 + GFF5584 0.68 -1.2
205,864 + GFF5584 0.68 +0.2
205,865 - GFF5584 0.69 +1.1
205,865 - GFF5584 0.69 +0.2
205,865 - GFF5584 0.69 -0.3
205,865 - GFF5584 0.69 -0.3
205,865 - GFF5584 0.69 +0.5
205,865 - GFF5584 0.69 -1.5
205,865 - GFF5584 0.69 +1.1
205,865 - GFF5584 0.69 +0.5
205,865 - GFF5584 0.69 -1.9
205,865 - GFF5584 0.69 -1.1
205,865 - GFF5584 0.69 -0.9
205,865 - GFF5584 0.69 -0.2
206,071 + -0.2
206,071 + -0.7
206,071 + -0.1
206,072 - -0.6
206,072 - -0.2
206,072 - +0.4
206,308 + -0.1
206,309 - +1.1
206,426 + GFF5585 0.36 -1.1
206,427 - GFF5585 0.37 -1.5
206,427 - GFF5585 0.37 -0.3
206,427 - GFF5585 0.37 -1.6
206,427 - GFF5585 0.37 +1.4
206,575 + GFF5585 0.72 -0.1
206,575 + GFF5585 0.72 -1.3
206,576 - GFF5585 0.72 +0.4
206,794 + -0.5
206,794 + -1.7
206,794 + +0.2
206,795 - +0.4
206,795 - +0.8
207,169 + GFF5586 0.47 +1.1
207,169 + GFF5586 0.47 -0.6
207,169 + GFF5586 0.47 +1.1
207,169 + GFF5586 0.47 -0.3
207,169 + GFF5586 0.47 -1.0
207,169 + GFF5586 0.47 -0.4
207,169 + GFF5586 0.47 -0.6
207,169 + GFF5586 0.47 +0.6
207,169 + GFF5586 0.47 -1.6
207,170 - GFF5586 0.47 +0.3
207,170 - GFF5586 0.47 +2.8
207,170 - GFF5586 0.47 -0.0
207,170 - GFF5586 0.47 -0.9
207,240 + GFF5586 0.54 +0.3
207,240 + GFF5586 0.54 -0.6
207,240 + GFF5586 0.54 -1.3
207,556 + GFF5586 0.86 +0.5
207,556 + GFF5586 0.86 -1.0
207,556 + GFF5586 0.86 +0.8
207,556 + GFF5586 0.86 -0.1
207,556 + GFF5586 0.86 +0.3
207,556 + GFF5586 0.86 +0.2
207,556 + GFF5586 0.86 -0.5
207,556 + GFF5586 0.86 +0.3
207,556 + GFF5586 0.86 +0.1
207,556 + GFF5586 0.86 -0.0
207,556 + GFF5586 0.86 +1.4
207,556 + GFF5586 0.86 +0.2
207,556 + GFF5586 0.86 -0.4
207,556 + GFF5586 0.86 +0.1
207,557 - GFF5586 0.87 +0.1
207,557 - GFF5586 0.87 +1.1
207,557 - GFF5586 0.87 -3.2
207,557 - GFF5586 0.87 +0.8
207,557 - GFF5586 0.87 +0.4
207,557 - GFF5586 0.87 -1.1
207,557 - GFF5586 0.87 -1.4
207,557 - GFF5586 0.87 -0.2
207,557 - GFF5586 0.87 +0.1
207,557 - GFF5586 0.87 +0.2
207,557 - GFF5586 0.87 -0.3
207,658 + -0.8
207,658 + -1.7
207,658 + -0.0
207,659 - +0.3
207,659 - +0.5
207,659 - +0.8

Or see this region's nucleotide sequence