Strain Fitness in Variovorax sp. SCN45 around GFF5329

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5327 and GFF5328 overlap by 4 nucleotidesGFF5328 and GFF5329 overlap by 4 nucleotidesGFF5329 and GFF5330 are separated by 16 nucleotidesGFF5330 and GFF5331 are separated by 68 nucleotides GFF5327 - Uncharacterized MFS-type transporter, at 204,680 to 205,936 GFF5327 GFF5328 - FIG00537720: hypothetical protein, at 205,933 to 206,508 GFF5328 GFF5329 - SAM-dependent methyltransferase, at 206,505 to 207,389 GFF5329 GFF5330 - no description, at 207,406 to 208,113 GFF5330 GFF5331 - Transposase and inactivated derivatives, at 208,182 to 208,877 GFF5331 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 206.062 kb on + strand, within GFF5328at 206.062 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.071 kb on + strand, within GFF5328at 206.072 kb on - strand, within GFF5328at 206.347 kb on + strand, within GFF5328at 206.348 kb on - strand, within GFF5328at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.679 kb on + strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.680 kb on - strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.772 kb on + strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.773 kb on - strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.790 kb on + strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.791 kb on - strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.829 kb on + strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 206.830 kb on - strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.201 kb on + strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.202 kb on - strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.219 kb on + strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.220 kb on - strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.288 kb on + strand, within GFF5329at 207.289 kb on - strand, within GFF5329at 207.289 kb on - strand, within GFF5329at 207.582 kb on - strand, within GFF5330at 207.582 kb on - strand, within GFF5330at 207.629 kb on - strand, within GFF5330at 207.929 kb on + strand, within GFF5330at 208.138 kb on - strandat 208.138 kb on - strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.150 kb on + strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.151 kb on - strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.155 kb on + strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.156 kb on - strandat 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.341 kb on + strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331at 208.342 kb on - strand, within GFF5331

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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205,649 + GFF5327 0.77 +2.1
205,649 + GFF5327 0.77 -0.4
205,649 + GFF5327 0.77 -0.7
205,649 + GFF5327 0.77 -0.0
205,649 + GFF5327 0.77 -0.6
205,650 - GFF5327 0.77 +0.6
205,650 - GFF5327 0.77 -0.2
205,650 - GFF5327 0.77 -0.7
206,062 + GFF5328 0.22 +0.8
206,062 + GFF5328 0.22 -0.2
206,071 + GFF5328 0.24 +0.1
206,071 + GFF5328 0.24 -1.1
206,071 + GFF5328 0.24 -0.2
206,072 - GFF5328 0.24 -1.0
206,347 + GFF5328 0.72 -2.1
206,348 - GFF5328 0.72 +1.1
206,679 + GFF5329 0.20 -0.3
206,679 + GFF5329 0.20 -0.6
206,679 + GFF5329 0.20 -0.3
206,679 + GFF5329 0.20 -0.9
206,679 + GFF5329 0.20 +0.5
206,679 + GFF5329 0.20 +0.5
206,679 + GFF5329 0.20 +0.8
206,679 + GFF5329 0.20 +0.5
206,679 + GFF5329 0.20 -0.7
206,679 + GFF5329 0.20 -0.2
206,679 + GFF5329 0.20 +0.6
206,679 + GFF5329 0.20 -1.3
206,679 + GFF5329 0.20 -0.8
206,679 + GFF5329 0.20 +0.6
206,680 - GFF5329 0.20 -1.9
206,680 - GFF5329 0.20 -0.4
206,680 - GFF5329 0.20 -0.6
206,680 - GFF5329 0.20 +0.5
206,680 - GFF5329 0.20 +1.3
206,680 - GFF5329 0.20 +0.6
206,680 - GFF5329 0.20 +0.3
206,680 - GFF5329 0.20 -0.2
206,680 - GFF5329 0.20 -1.1
206,680 - GFF5329 0.20 +0.2
206,680 - GFF5329 0.20 -0.6
206,680 - GFF5329 0.20 +0.4
206,772 + GFF5329 0.30 +0.0
206,772 + GFF5329 0.30 +1.7
206,772 + GFF5329 0.30 -0.3
206,773 - GFF5329 0.30 -1.2
206,773 - GFF5329 0.30 -0.7
206,790 + GFF5329 0.32 -1.2
206,790 + GFF5329 0.32 -0.2
206,790 + GFF5329 0.32 -1.3
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 +2.0
206,790 + GFF5329 0.32 -0.0
206,790 + GFF5329 0.32 +0.1
206,790 + GFF5329 0.32 -0.8
206,790 + GFF5329 0.32 -0.7
206,790 + GFF5329 0.32 +1.3
206,790 + GFF5329 0.32 -0.3
206,790 + GFF5329 0.32 -0.2
206,790 + GFF5329 0.32 +1.6
206,790 + GFF5329 0.32 +1.4
206,790 + GFF5329 0.32 +0.3
206,790 + GFF5329 0.32 +0.6
206,790 + GFF5329 0.32 +0.0
206,790 + GFF5329 0.32 +1.0
206,790 + GFF5329 0.32 -0.7
206,790 + GFF5329 0.32 +0.6
206,791 - GFF5329 0.32 -1.0
206,791 - GFF5329 0.32 -1.4
206,791 - GFF5329 0.32 -0.3
206,791 - GFF5329 0.32 -0.6
206,791 - GFF5329 0.32 -0.2
206,791 - GFF5329 0.32 -0.1
206,791 - GFF5329 0.32 +0.1
206,791 - GFF5329 0.32 -0.5
206,791 - GFF5329 0.32 +0.4
206,791 - GFF5329 0.32 +0.0
206,791 - GFF5329 0.32 +0.4
206,791 - GFF5329 0.32 -1.0
206,791 - GFF5329 0.32 +1.0
206,791 - GFF5329 0.32 +0.3
206,791 - GFF5329 0.32 -0.6
206,791 - GFF5329 0.32 -0.7
206,791 - GFF5329 0.32 +0.7
206,791 - GFF5329 0.32 -1.2
206,791 - GFF5329 0.32 +1.1
206,791 - GFF5329 0.32 -1.7
206,791 - GFF5329 0.32 -2.3
206,791 - GFF5329 0.32 -1.7
206,791 - GFF5329 0.32 -0.0
206,791 - GFF5329 0.32 +0.3
206,829 + GFF5329 0.37 +1.1
206,829 + GFF5329 0.37 -0.6
206,829 + GFF5329 0.37 +0.8
206,829 + GFF5329 0.37 -1.6
206,830 - GFF5329 0.37 -0.8
206,830 - GFF5329 0.37 -0.4
206,830 - GFF5329 0.37 +0.3
206,830 - GFF5329 0.37 +0.5
206,830 - GFF5329 0.37 -0.5
206,830 - GFF5329 0.37 +1.1
206,830 - GFF5329 0.37 -0.3
207,201 + GFF5329 0.79 +1.1
207,201 + GFF5329 0.79 -1.6
207,201 + GFF5329 0.79 +0.3
207,202 - GFF5329 0.79 +0.3
207,202 - GFF5329 0.79 -0.2
207,202 - GFF5329 0.79 -1.8
207,202 - GFF5329 0.79 +1.0
207,219 + GFF5329 0.81 -1.9
207,219 + GFF5329 0.81 +0.0
207,220 - GFF5329 0.81 -0.3
207,220 - GFF5329 0.81 +0.0
207,288 + GFF5329 0.88 -0.8
207,288 + GFF5329 0.88 +1.4
207,288 + GFF5329 0.88 +0.4
207,289 - GFF5329 0.89 +0.5
207,289 - GFF5329 0.89 -1.2
207,582 - GFF5330 0.25 -1.1
207,582 - GFF5330 0.25 -0.7
207,629 - GFF5330 0.31 -0.5
207,929 + GFF5330 0.74 -0.6
208,138 - +0.9
208,138 - -0.5
208,150 + +0.3
208,150 + -1.4
208,150 + -0.4
208,150 + -0.6
208,151 - -0.1
208,151 - +0.2
208,151 - +0.7
208,151 - +0.0
208,155 + +1.1
208,155 + -0.5
208,155 + -0.7
208,155 + -0.3
208,156 - -0.6
208,156 - +0.0
208,156 - -1.5
208,156 - -0.3
208,156 - -0.6
208,156 - +0.1
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 +0.3
208,341 + GFF5331 0.23 +0.6
208,341 + GFF5331 0.23 -0.0
208,341 + GFF5331 0.23 +0.7
208,341 + GFF5331 0.23 -0.8
208,341 + GFF5331 0.23 -1.1
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 -0.1
208,341 + GFF5331 0.23 -0.3
208,341 + GFF5331 0.23 -1.4
208,341 + GFF5331 0.23 -0.2
208,341 + GFF5331 0.23 +0.5
208,341 + GFF5331 0.23 +0.6
208,341 + GFF5331 0.23 -0.1
208,341 + GFF5331 0.23 +0.3
208,341 + GFF5331 0.23 -0.9
208,341 + GFF5331 0.23 +1.1
208,341 + GFF5331 0.23 +0.3
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 -0.8
208,341 + GFF5331 0.23 -0.0
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 +0.1
208,341 + GFF5331 0.23 +0.0
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 -0.4
208,341 + GFF5331 0.23 +0.9
208,341 + GFF5331 0.23 -0.0
208,342 - GFF5331 0.23 +0.3
208,342 - GFF5331 0.23 -1.5
208,342 - GFF5331 0.23 -0.4
208,342 - GFF5331 0.23 -1.0
208,342 - GFF5331 0.23 -1.1
208,342 - GFF5331 0.23 -0.4
208,342 - GFF5331 0.23 -2.9
208,342 - GFF5331 0.23 -0.9
208,342 - GFF5331 0.23 -0.9
208,342 - GFF5331 0.23 -2.3
208,342 - GFF5331 0.23 +1.1
208,342 - GFF5331 0.23 -1.9
208,342 - GFF5331 0.23 +1.7
208,342 - GFF5331 0.23 -0.9
208,342 - GFF5331 0.23 -0.8
208,342 - GFF5331 0.23 -0.2
208,342 - GFF5331 0.23 +1.5
208,342 - GFF5331 0.23 -0.5
208,342 - GFF5331 0.23 -0.9
208,342 - GFF5331 0.23 -1.4
208,342 - GFF5331 0.23 -0.2
208,342 - GFF5331 0.23 -0.2
208,342 - GFF5331 0.23 -0.9
208,342 - GFF5331 0.23 -0.4
208,342 - GFF5331 0.23 +1.6
208,342 - GFF5331 0.23 +0.1
208,342 - GFF5331 0.23 -0.5
208,342 - GFF5331 0.23 +0.5

Or see this region's nucleotide sequence