Strain Fitness in Variovorax sp. SCN45 around GFF4929

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
20,790	+		GFF4928	0.59	+0.8
20,790	+		GFF4928	0.59	-0.3
20,790	+		GFF4928	0.59	-0.3
20,790	+		GFF4928	0.59	+0.5
20,791	-		GFF4928	0.59	-0.2
20,791	-		GFF4928	0.59	-0.1
20,791	-		GFF4928	0.59	+1.5
20,791	-		GFF4928	0.59	-0.5
20,851	-		GFF4928	0.61	+0.2
21,084	+		GFF4928	0.71	+0.5
21,084	+		GFF4928	0.71	+0.3
21,085	-		GFF4928	0.71	+0.1
21,085	-		GFF4928	0.71	-0.4
21,085	-		GFF4928	0.71	-0.3
21,085	-		GFF4928	0.71	-0.4
21,340	-		GFF4928	0.82	-0.6
21,378	+		GFF4928	0.84	-1.5
21,402	+		GFF4928	0.85	-1.8
21,402	+		GFF4928	0.85	+0.2
21,402	+		GFF4928	0.85	+0.3
21,403	-		GFF4928	0.85	-0.7
21,403	-		GFF4928	0.85	-0.7
21,507	+		GFF4928	0.89	-0.5
21,507	+		GFF4928	0.89	-1.0
21,507	+		GFF4928	0.89	-0.3
21,507	+		GFF4928	0.89	+0.0
21,507	+		GFF4928	0.89	-0.0
21,508	-		GFF4928	0.89	+0.9
21,508	-		GFF4928	0.89	-0.6
21,508	-		GFF4928	0.89	-0.3
21,508	-		GFF4928	0.89	-1.1
21,621	+				+0.7
21,621	+				-0.5
21,621	+				-0.9
21,621	+				+0.6
21,622	-				-0.6
21,622	-				-0.3
21,920	+		GFF4929	0.12	-0.5
21,920	+		GFF4929	0.12	-0.9
21,920	+		GFF4929	0.12	+0.6
21,920	+		GFF4929	0.12	-0.7
21,920	+		GFF4929	0.12	-0.4
21,920	+		GFF4929	0.12	-0.6
21,920	+		GFF4929	0.12	+0.3
21,921	-		GFF4929	0.12	-1.9
21,921	-		GFF4929	0.12	-0.3
21,921	-		GFF4929	0.12	-0.7
21,921	-		GFF4929	0.12	-0.8
22,199	+		GFF4929	0.31	+0.7
22,199	+		GFF4929	0.31	-0.4
22,199	+		GFF4929	0.31	-1.6
22,199	+		GFF4929	0.31	+0.1
22,200	-		GFF4929	0.32	+0.2
22,200	-		GFF4929	0.32	-0.3
22,200	-		GFF4929	0.32	-1.0
22,200	-		GFF4929	0.32	-0.9
22,200	-		GFF4929	0.32	+1.0
22,200	-		GFF4929	0.32	+0.7
22,200	-		GFF4929	0.32	-1.1
22,200	-		GFF4929	0.32	+0.7
22,200	-		GFF4929	0.32	-1.3
22,200	-		GFF4929	0.32	-0.8
22,200	-		GFF4929	0.32	-0.5
22,200	-		GFF4929	0.32	+1.0
22,283	+		GFF4929	0.37	-0.6
22,284	-		GFF4929	0.38	-0.8
22,394	+		GFF4929	0.45	-1.0
22,395	-		GFF4929	0.45	-1.5
22,395	-		GFF4929	0.45	-0.9
22,604	+		GFF4929	0.60	+0.3
22,604	+		GFF4929	0.60	-2.3
22,605	-		GFF4929	0.60	-2.5
22,653	-		GFF4929	0.64	-0.6
22,653	-		GFF4929	0.64	+1.8
22,653	-		GFF4929	0.64	-0.3
22,653	-		GFF4929	0.64	-0.9
22,653	-		GFF4929	0.64	-0.2
22,712	+		GFF4929	0.68	-0.0
22,712	+		GFF4929	0.68	-1.0
22,712	+		GFF4929	0.68	-0.1
22,713	-		GFF4929	0.68	-0.4
22,770	-		GFF4929	0.72	-0.7
22,770	-		GFF4929	0.72	-0.2
23,039	+				-0.5
23,039	+				-0.5
23,039	+				-1.1
23,039	+				+0.3
23,040	-				-0.8
23,040	-				-0.7
23,040	-				+2.0
23,040	-				+0.3
23,040	-				+1.0
23,040	-				+0.5
23,040	-				+0.3
23,040	-				+0.9
23,040	-				-0.7
23,093	+				-0.6
23,093	+				+0.3
23,093	+				-0.3
23,093	+				-0.6
23,094	-				-0.8
23,175	-				+0.3
23,175	-				-1.5
23,210	-				+0.3
23,233	-				-0.1
23,238	+				-0.3
23,239	-				+0.2
23,258	+				-0.4
23,259	-				-0.0
23,259	-				-0.7
23,263	-				+0.2
23,379	+		GFF4930	0.12	-0.3
23,380	-		GFF4930	0.12	-2.3
23,380	-		GFF4930	0.12	-0.2
23,861	+		GFF4930	0.64	-1.8
23,861	+		GFF4930	0.64	+0.1
23,862	-		GFF4930	0.64	-0.5
23,862	-		GFF4930	0.64	+0.2
23,862	-		GFF4930	0.64	-0.5
23,862	-		GFF4930	0.64	-1.2
24,105	-				-2.0