Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4869 and GFF4870 overlap by 4 nucleotides GFF4870 and GFF4871 overlap by 4 nucleotides GFF4871 and GFF4872 overlap by 4 nucleotides GFF4872 and GFF4873 overlap by 4 nucleotides
GFF4869 - Type IV secretory pathway, protease TraF, at 241,963 to 242,550
GFF4869
GFF4870 - Glycosidases, at 242,547 to 243,080
GFF4870
GFF4871 - FIG00457034: hypothetical protein, at 243,077 to 243,340
GFF4871
GFF4872 - ParA-like protein, at 243,337 to 243,975
GFF4872
GFF4873 - no description, at 243,972 to 244,178
GFF4873
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.931 kb on + strand at 241.931 kb on + strand at 241.931 kb on + strand at 241.931 kb on + strand at 241.932 kb on - strand at 241.932 kb on - strand at 241.932 kb on - strand at 241.932 kb on - strand at 242.196 kb on + strand, within GFF4869 at 242.196 kb on + strand, within GFF4869 at 242.197 kb on - strand, within GFF4869 at 242.197 kb on - strand, within GFF4869 at 242.258 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.408 kb on + strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.409 kb on - strand, within GFF4869 at 242.597 kb on - strand at 242.597 kb on - strand at 242.597 kb on - strand at 242.597 kb on - strand at 242.647 kb on + strand, within GFF4870 at 242.842 kb on + strand, within GFF4870 at 242.842 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.953 kb on + strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.954 kb on - strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.977 kb on + strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 242.978 kb on - strand, within GFF4870 at 243.143 kb on + strand, within GFF4871 at 243.144 kb on - strand, within GFF4871 at 243.159 kb on - strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.213 kb on + strand, within GFF4871 at 243.527 kb on - strand, within GFF4872 at 243.527 kb on - strand, within GFF4872 at 243.635 kb on + strand, within GFF4872 at 243.635 kb on + strand, within GFF4872 at 243.636 kb on - strand, within GFF4872 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.061 kb on + strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.062 kb on - strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.064 kb on + strand, within GFF4873 at 244.065 kb on - strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.071 kb on + strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.072 kb on - strand, within GFF4873 at 244.080 kb on + strand, within GFF4873
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL remove 241,931 + -0.1 241,931 + +0.5 241,931 + +2.4 241,931 + +0.9 241,932 - -1.1 241,932 - -0.4 241,932 - -0.4 241,932 - +0.2 242,196 + GFF4869 0.40 -1.7 242,196 + GFF4869 0.40 -1.9 242,197 - GFF4869 0.40 -0.5 242,197 - GFF4869 0.40 -0.5 242,258 + GFF4869 0.50 +0.3 242,408 + GFF4869 0.76 +0.3 242,408 + GFF4869 0.76 +1.3 242,408 + GFF4869 0.76 -1.1 242,408 + GFF4869 0.76 -0.3 242,409 - GFF4869 0.76 -0.5 242,409 - GFF4869 0.76 -0.4 242,409 - GFF4869 0.76 -0.3 242,409 - GFF4869 0.76 -1.3 242,409 - GFF4869 0.76 -1.7 242,409 - GFF4869 0.76 +0.4 242,409 - GFF4869 0.76 +0.6 242,409 - GFF4869 0.76 +1.2 242,409 - GFF4869 0.76 +1.9 242,597 - -0.4 242,597 - -2.5 242,597 - +0.2 242,597 - -0.1 242,647 + GFF4870 0.19 -0.5 242,842 + GFF4870 0.55 -2.2 242,842 + GFF4870 0.55 -0.7 242,953 + GFF4870 0.76 -0.6 242,953 + GFF4870 0.76 +1.2 242,953 + GFF4870 0.76 -0.1 242,953 + GFF4870 0.76 -1.3 242,953 + GFF4870 0.76 +0.6 242,954 - GFF4870 0.76 +0.3 242,954 - GFF4870 0.76 +0.2 242,954 - GFF4870 0.76 +0.3 242,977 + GFF4870 0.81 -0.7 242,977 + GFF4870 0.81 -1.3 242,977 + GFF4870 0.81 -0.1 242,977 + GFF4870 0.81 +1.3 242,977 + GFF4870 0.81 +0.2 242,977 + GFF4870 0.81 -0.2 242,977 + GFF4870 0.81 +1.1 242,977 + GFF4870 0.81 +1.4 242,977 + GFF4870 0.81 -2.9 242,977 + GFF4870 0.81 -0.1 242,977 + GFF4870 0.81 +0.5 242,977 + GFF4870 0.81 +0.2 242,977 + GFF4870 0.81 -1.9 242,977 + GFF4870 0.81 +1.0 242,977 + GFF4870 0.81 +0.5 242,977 + GFF4870 0.81 -1.1 242,977 + GFF4870 0.81 -1.1 242,977 + GFF4870 0.81 -0.5 242,977 + GFF4870 0.81 -0.7 242,978 - GFF4870 0.81 +0.0 242,978 - GFF4870 0.81 +0.5 242,978 - GFF4870 0.81 +1.0 242,978 - GFF4870 0.81 +0.8 242,978 - GFF4870 0.81 +0.5 242,978 - GFF4870 0.81 -0.4 242,978 - GFF4870 0.81 -0.7 242,978 - GFF4870 0.81 -0.3 242,978 - GFF4870 0.81 -0.5 242,978 - GFF4870 0.81 -0.7 242,978 - GFF4870 0.81 +0.9 242,978 - GFF4870 0.81 -0.4 243,143 + GFF4871 0.25 +0.2 243,144 - GFF4871 0.25 -1.3 243,159 - GFF4871 0.31 +0.6 243,213 + GFF4871 0.52 -0.3 243,213 + GFF4871 0.52 -0.6 243,213 + GFF4871 0.52 +0.7 243,213 + GFF4871 0.52 +0.0 243,213 + GFF4871 0.52 -1.1 243,527 - GFF4872 0.30 -1.0 243,527 - GFF4872 0.30 -0.8 243,635 + GFF4872 0.47 +0.6 243,635 + GFF4872 0.47 +0.0 243,636 - GFF4872 0.47 -0.1 244,061 + GFF4873 0.43 +1.6 244,061 + GFF4873 0.43 -1.1 244,061 + GFF4873 0.43 -0.5 244,061 + GFF4873 0.43 -1.3 244,061 + GFF4873 0.43 -0.8 244,061 + GFF4873 0.43 -0.0 244,061 + GFF4873 0.43 +1.0 244,061 + GFF4873 0.43 -0.1 244,061 + GFF4873 0.43 -0.2 244,061 + GFF4873 0.43 -0.1 244,061 + GFF4873 0.43 -0.0 244,061 + GFF4873 0.43 -0.1 244,062 - GFF4873 0.43 +0.5 244,062 - GFF4873 0.43 -0.2 244,062 - GFF4873 0.43 -0.1 244,062 - GFF4873 0.43 -0.5 244,062 - GFF4873 0.43 -0.7 244,062 - GFF4873 0.43 -0.1 244,064 + GFF4873 0.44 -0.5 244,064 + GFF4873 0.44 -0.5 244,064 + GFF4873 0.44 +0.3 244,065 - GFF4873 0.45 -1.0 244,071 + GFF4873 0.48 -0.3 244,071 + GFF4873 0.48 +0.5 244,071 + GFF4873 0.48 -1.2 244,072 - GFF4873 0.48 +0.3 244,072 - GFF4873 0.48 -0.7 244,072 - GFF4873 0.48 +1.3 244,072 - GFF4873 0.48 -0.4 244,080 + GFF4873 0.52 -1.1
Or see this region's nucleotide sequence