Strain Fitness in Variovorax sp. SCN45 around GFF4843

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4841 and GFF4842 are separated by 2 nucleotidesGFF4842 and GFF4843 overlap by 4 nucleotidesGFF4843 and GFF4844 are separated by 18 nucleotides GFF4841 - Conjugative transfer protein TrbI, at 210,531 to 211,802 GFF4841 GFF4842 - Conjugative transfer protein TrbG, at 211,805 to 212,800 GFF4842 GFF4843 - Conjugative transfer protein TrbF, at 212,797 to 213,501 GFF4843 GFF4844 - Conjugative transfer protein TrbL, at 213,520 to 214,872 GFF4844 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.908 kb on + strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.909 kb on - strand, within GFF4842at 211.911 kb on + strand, within GFF4842at 211.911 kb on + strand, within GFF4842at 211.912 kb on - strand, within GFF4842at 211.929 kb on + strand, within GFF4842at 211.930 kb on - strand, within GFF4842at 211.930 kb on - strand, within GFF4842at 211.930 kb on - strand, within GFF4842at 212.014 kb on + strand, within GFF4842at 212.014 kb on + strand, within GFF4842at 212.015 kb on - strand, within GFF4842at 212.015 kb on - strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.016 kb on + strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.017 kb on - strand, within GFF4842at 212.184 kb on + strand, within GFF4842at 212.184 kb on + strand, within GFF4842at 212.185 kb on - strand, within GFF4842at 212.241 kb on + strand, within GFF4842at 212.241 kb on + strand, within GFF4842at 212.241 kb on + strand, within GFF4842at 212.241 kb on + strand, within GFF4842at 212.242 kb on - strand, within GFF4842at 212.363 kb on + strand, within GFF4842at 212.364 kb on - strand, within GFF4842at 212.432 kb on + strand, within GFF4842at 212.442 kb on + strand, within GFF4842at 212.442 kb on + strand, within GFF4842at 212.443 kb on - strand, within GFF4842at 212.443 kb on - strand, within GFF4842at 212.451 kb on + strand, within GFF4842at 212.451 kb on + strand, within GFF4842at 212.452 kb on - strand, within GFF4842at 212.496 kb on + strand, within GFF4842at 212.496 kb on + strand, within GFF4842at 212.496 kb on + strand, within GFF4842at 212.497 kb on - strand, within GFF4842at 212.497 kb on - strand, within GFF4842at 212.682 kb on - strand, within GFF4842at 212.682 kb on - strand, within GFF4842at 212.783 kb on - strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.855 kb on + strandat 212.856 kb on - strandat 212.856 kb on - strandat 212.856 kb on - strandat 212.856 kb on - strandat 212.856 kb on - strandat 213.081 kb on - strand, within GFF4843at 213.117 kb on - strand, within GFF4843at 213.122 kb on + strand, within GFF4843at 213.122 kb on + strand, within GFF4843at 213.123 kb on - strand, within GFF4843at 213.291 kb on - strand, within GFF4843at 213.291 kb on - strand, within GFF4843at 213.388 kb on - strand, within GFF4843at 213.388 kb on - strand, within GFF4843at 213.388 kb on - strand, within GFF4843at 213.388 kb on - strand, within GFF4843at 213.473 kb on + strandat 213.600 kb on + strandat 213.600 kb on + strandat 213.771 kb on - strand, within GFF4844at 213.771 kb on - strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.183 kb on + strand, within GFF4844at 214.184 kb on - strand, within GFF4844at 214.184 kb on - strand, within GFF4844at 214.285 kb on + strand, within GFF4844at 214.286 kb on - strand, within GFF4844

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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211,908 + GFF4842 0.10 -1.9
211,908 + GFF4842 0.10 -1.9
211,908 + GFF4842 0.10 -0.7
211,908 + GFF4842 0.10 -1.7
211,908 + GFF4842 0.10 +1.3
211,908 + GFF4842 0.10 -0.5
211,908 + GFF4842 0.10 -0.5
211,908 + GFF4842 0.10 -0.3
211,908 + GFF4842 0.10 +0.7
211,909 - GFF4842 0.10 -0.2
211,909 - GFF4842 0.10 -1.1
211,909 - GFF4842 0.10 -0.4
211,909 - GFF4842 0.10 +0.3
211,909 - GFF4842 0.10 -1.1
211,909 - GFF4842 0.10 -0.1
211,909 - GFF4842 0.10 +0.2
211,911 + GFF4842 0.11 -1.2
211,911 + GFF4842 0.11 -0.1
211,912 - GFF4842 0.11 -0.2
211,929 + GFF4842 0.12 +1.0
211,930 - GFF4842 0.13 -1.1
211,930 - GFF4842 0.13 -0.5
211,930 - GFF4842 0.13 -0.2
212,014 + GFF4842 0.21 -0.8
212,014 + GFF4842 0.21 -0.4
212,015 - GFF4842 0.21 -1.1
212,015 - GFF4842 0.21 +0.3
212,016 + GFF4842 0.21 -0.5
212,016 + GFF4842 0.21 +0.3
212,016 + GFF4842 0.21 -1.4
212,016 + GFF4842 0.21 -1.2
212,016 + GFF4842 0.21 -0.8
212,016 + GFF4842 0.21 -1.0
212,016 + GFF4842 0.21 +0.5
212,016 + GFF4842 0.21 -2.0
212,016 + GFF4842 0.21 +1.9
212,016 + GFF4842 0.21 -0.8
212,016 + GFF4842 0.21 +0.4
212,017 - GFF4842 0.21 -0.7
212,017 - GFF4842 0.21 +0.3
212,017 - GFF4842 0.21 -0.7
212,017 - GFF4842 0.21 +0.1
212,017 - GFF4842 0.21 -1.1
212,017 - GFF4842 0.21 -0.6
212,184 + GFF4842 0.38 -1.2
212,184 + GFF4842 0.38 +0.4
212,185 - GFF4842 0.38 -0.5
212,241 + GFF4842 0.44 +2.0
212,241 + GFF4842 0.44 -0.6
212,241 + GFF4842 0.44 +0.9
212,241 + GFF4842 0.44 +0.1
212,242 - GFF4842 0.44 +1.1
212,363 + GFF4842 0.56 -0.5
212,364 - GFF4842 0.56 +0.9
212,432 + GFF4842 0.63 +0.6
212,442 + GFF4842 0.64 -0.5
212,442 + GFF4842 0.64 -0.3
212,443 - GFF4842 0.64 +0.2
212,443 - GFF4842 0.64 +0.0
212,451 + GFF4842 0.65 -1.5
212,451 + GFF4842 0.65 +0.1
212,452 - GFF4842 0.65 -1.6
212,496 + GFF4842 0.69 +1.1
212,496 + GFF4842 0.69 -0.6
212,496 + GFF4842 0.69 +1.5
212,497 - GFF4842 0.69 -0.1
212,497 - GFF4842 0.69 -0.5
212,682 - GFF4842 0.88 -1.6
212,682 - GFF4842 0.88 -0.0
212,783 - -1.1
212,855 + +0.6
212,855 + -0.7
212,855 + -0.2
212,855 + -0.4
212,855 + -3.5
212,855 + +1.1
212,855 + -0.7
212,856 - +0.7
212,856 - -0.1
212,856 - -2.0
212,856 - -0.1
212,856 - -0.1
213,081 - GFF4843 0.40 +1.9
213,117 - GFF4843 0.45 -1.0
213,122 + GFF4843 0.46 -0.3
213,122 + GFF4843 0.46 -0.1
213,123 - GFF4843 0.46 -0.3
213,291 - GFF4843 0.70 +0.9
213,291 - GFF4843 0.70 -0.5
213,388 - GFF4843 0.84 -1.4
213,388 - GFF4843 0.84 -0.1
213,388 - GFF4843 0.84 -0.1
213,388 - GFF4843 0.84 -0.1
213,473 + -0.3
213,600 + +0.3
213,600 + -0.1
213,771 - GFF4844 0.19 +0.3
213,771 - GFF4844 0.19 +0.1
214,183 + GFF4844 0.49 -0.8
214,183 + GFF4844 0.49 -0.7
214,183 + GFF4844 0.49 -0.3
214,183 + GFF4844 0.49 -0.2
214,184 - GFF4844 0.49 +0.2
214,184 - GFF4844 0.49 -0.4
214,285 + GFF4844 0.57 +1.0
214,286 - GFF4844 0.57 -1.1

Or see this region's nucleotide sequence