Strain Fitness in Variovorax sp. SCN45 around GFF4535

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4534 and GFF4535 overlap by 4 nucleotidesGFF4535 and GFF4536 are separated by 18 nucleotidesGFF4536 and GFF4537 overlap by 4 nucleotides GFF4534 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 172,449 to 173,927 GFF4534 GFF4535 - Tetrapartite efflux system, membrane fusion component FusE-like, at 173,924 to 174,862 GFF4535 GFF4536 - Tetrapartite efflux system component, FusD-like, at 174,881 to 175,087 GFF4536 GFF4537 - Tetrapartite efflux system, inner membrane component FusBC-like, at 175,084 to 177,216 GFF4537 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 172.966 kb on + strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 173.167 kb on + strand, within GFF4534at 173.168 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.491 kb on + strand, within GFF4534at 173.491 kb on + strand, within GFF4534at 173.492 kb on - strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.515 kb on + strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.516 kb on - strand, within GFF4534at 173.539 kb on + strand, within GFF4534at 173.539 kb on + strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.540 kb on - strand, within GFF4534at 173.578 kb on + strand, within GFF4534at 173.579 kb on - strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.611 kb on + strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.612 kb on - strand, within GFF4534at 173.734 kb on + strand, within GFF4534at 173.839 kb on + strandat 174.255 kb on + strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.256 kb on - strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.267 kb on + strand, within GFF4535at 174.268 kb on - strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.318 kb on + strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.319 kb on - strand, within GFF4535at 174.592 kb on - strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.744 kb on + strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.745 kb on - strand, within GFF4535at 174.875 kb on - strandat 174.878 kb on + strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.879 kb on - strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.882 kb on + strandat 174.883 kb on - strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.891 kb on + strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.915 kb on + strand, within GFF4536at 174.916 kb on - strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.930 kb on + strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.931 kb on - strand, within GFF4536at 174.972 kb on + strand, within GFF4536at 174.972 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.056 kb on + strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.057 kb on - strand, within GFF4536at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.496 kb on + strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.497 kb on - strand, within GFF4537at 175.514 kb on + strand, within GFF4537at 175.515 kb on - strand, within GFF4537at 175.515 kb on - strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.772 kb on + strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.773 kb on - strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.856 kb on + strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537at 175.857 kb on - strand, within GFF4537

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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172,966 + GFF4534 0.35 -1.5
172,966 + GFF4534 0.35 -1.5
173,167 + GFF4534 0.49 +0.3
173,168 - GFF4534 0.49 +1.3
173,369 - GFF4534 0.62 -1.4
173,369 - GFF4534 0.62 +0.1
173,491 + GFF4534 0.70 -0.3
173,491 + GFF4534 0.70 +0.2
173,492 - GFF4534 0.71 +0.2
173,515 + GFF4534 0.72 -0.4
173,515 + GFF4534 0.72 +0.2
173,515 + GFF4534 0.72 +1.5
173,515 + GFF4534 0.72 +1.4
173,515 + GFF4534 0.72 -0.4
173,515 + GFF4534 0.72 -0.1
173,515 + GFF4534 0.72 -0.0
173,516 - GFF4534 0.72 +0.5
173,516 - GFF4534 0.72 -0.9
173,516 - GFF4534 0.72 +1.8
173,516 - GFF4534 0.72 +0.0
173,516 - GFF4534 0.72 -0.4
173,516 - GFF4534 0.72 -0.6
173,539 + GFF4534 0.74 -0.3
173,539 + GFF4534 0.74 -0.0
173,540 - GFF4534 0.74 +0.2
173,540 - GFF4534 0.74 +0.6
173,540 - GFF4534 0.74 +0.4
173,540 - GFF4534 0.74 -0.8
173,578 + GFF4534 0.76 +0.2
173,579 - GFF4534 0.76 -0.6
173,611 + GFF4534 0.79 +0.2
173,611 + GFF4534 0.79 +1.7
173,611 + GFF4534 0.79 -0.1
173,612 - GFF4534 0.79 -0.3
173,612 - GFF4534 0.79 -1.7
173,612 - GFF4534 0.79 +0.6
173,734 + GFF4534 0.87 -0.5
173,839 + -1.6
174,255 + GFF4535 0.35 -1.4
174,256 - GFF4535 0.35 +0.4
174,256 - GFF4535 0.35 +0.5
174,256 - GFF4535 0.35 +0.4
174,256 - GFF4535 0.35 -0.6
174,267 + GFF4535 0.37 +1.8
174,267 + GFF4535 0.37 +0.9
174,267 + GFF4535 0.37 -0.9
174,267 + GFF4535 0.37 +0.4
174,267 + GFF4535 0.37 -1.0
174,268 - GFF4535 0.37 -0.5
174,318 + GFF4535 0.42 -1.7
174,318 + GFF4535 0.42 -0.1
174,318 + GFF4535 0.42 +0.4
174,318 + GFF4535 0.42 -0.4
174,318 + GFF4535 0.42 -0.6
174,318 + GFF4535 0.42 +1.2
174,318 + GFF4535 0.42 +0.4
174,318 + GFF4535 0.42 -1.1
174,319 - GFF4535 0.42 -1.2
174,319 - GFF4535 0.42 -0.0
174,592 - GFF4535 0.71 -0.3
174,744 + GFF4535 0.87 +2.2
174,744 + GFF4535 0.87 -0.7
174,744 + GFF4535 0.87 +2.2
174,745 - GFF4535 0.87 -0.7
174,745 - GFF4535 0.87 -0.8
174,745 - GFF4535 0.87 -0.4
174,875 - -0.4
174,878 + +0.6
174,879 - +0.6
174,879 - -3.1
174,879 - -0.5
174,879 - -0.3
174,882 + +0.9
174,882 + -0.2
174,882 + -1.2
174,882 + +0.3
174,882 + +0.3
174,883 - -0.4
174,891 + -0.1
174,891 + +1.7
174,891 + -0.1
174,891 + -0.4
174,892 - -0.2
174,892 - -0.3
174,892 - -0.3
174,915 + GFF4536 0.16 -0.4
174,916 - GFF4536 0.17 -0.3
174,930 + GFF4536 0.24 +0.6
174,930 + GFF4536 0.24 +0.2
174,930 + GFF4536 0.24 -2.7
174,931 - GFF4536 0.24 +0.3
174,931 - GFF4536 0.24 +0.2
174,931 - GFF4536 0.24 -0.9
174,972 + GFF4536 0.44 -0.6
174,972 + GFF4536 0.44 -0.8
175,056 + GFF4536 0.85 -0.3
175,056 + GFF4536 0.85 -1.3
175,056 + GFF4536 0.85 -1.4
175,056 + GFF4536 0.85 -0.4
175,056 + GFF4536 0.85 -0.0
175,056 + GFF4536 0.85 +0.1
175,056 + GFF4536 0.85 +1.0
175,056 + GFF4536 0.85 +0.4
175,057 - GFF4536 0.85 +0.2
175,057 - GFF4536 0.85 +1.1
175,057 - GFF4536 0.85 +0.6
175,057 - GFF4536 0.85 -0.1
175,057 - GFF4536 0.85 -0.0
175,057 - GFF4536 0.85 -0.0
175,496 + GFF4537 0.19 -0.9
175,496 + GFF4537 0.19 -0.1
175,496 + GFF4537 0.19 -0.7
175,496 + GFF4537 0.19 +0.2
175,496 + GFF4537 0.19 +0.2
175,497 - GFF4537 0.19 -0.1
175,497 - GFF4537 0.19 -0.3
175,497 - GFF4537 0.19 -0.8
175,497 - GFF4537 0.19 +0.4
175,497 - GFF4537 0.19 -0.1
175,497 - GFF4537 0.19 -1.5
175,514 + GFF4537 0.20 -0.4
175,515 - GFF4537 0.20 +0.8
175,515 - GFF4537 0.20 +1.0
175,772 + GFF4537 0.32 -0.2
175,772 + GFF4537 0.32 -0.7
175,772 + GFF4537 0.32 -2.1
175,772 + GFF4537 0.32 +1.8
175,772 + GFF4537 0.32 -0.8
175,773 - GFF4537 0.32 +0.6
175,773 - GFF4537 0.32 -2.0
175,773 - GFF4537 0.32 +0.2
175,773 - GFF4537 0.32 +0.3
175,773 - GFF4537 0.32 -2.3
175,773 - GFF4537 0.32 -0.1
175,856 + GFF4537 0.36 +1.9
175,856 + GFF4537 0.36 +0.1
175,856 + GFF4537 0.36 +0.2
175,856 + GFF4537 0.36 +1.2
175,856 + GFF4537 0.36 -0.1
175,856 + GFF4537 0.36 +0.2
175,856 + GFF4537 0.36 -0.4
175,856 + GFF4537 0.36 +1.0
175,857 - GFF4537 0.36 -0.6
175,857 - GFF4537 0.36 +0.4
175,857 - GFF4537 0.36 -0.1
175,857 - GFF4537 0.36 -0.9
175,857 - GFF4537 0.36 +1.4
175,857 - GFF4537 0.36 +1.2
175,857 - GFF4537 0.36 +0.3

Or see this region's nucleotide sequence