Strain Fitness in Variovorax sp. SCN45 around GFF3304

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3302 and GFF3303 overlap by 4 nucleotidesGFF3303 and GFF3304 overlap by 4 nucleotidesGFF3304 and GFF3305 are separated by 11 nucleotidesGFF3305 and GFF3306 overlap by 20 nucleotides GFF3302 - no description, at 126,376 to 127,017 GFF3302 GFF3303 - Acetyltransferase, GNAT family, at 127,014 to 127,778 GFF3303 GFF3304 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 127,775 to 129,043 GFF3304 GFF3305 - hypothetical protein, at 129,055 to 129,624 GFF3305 GFF3306 - hypothetical protein, at 129,605 to 130,534 GFF3306 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 127.015 kb on + strandat 127.016 kb on - strandat 127.037 kb on - strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.263 kb on - strand, within GFF3303at 127.316 kb on + strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.317 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.487 kb on - strand, within GFF3303at 127.744 kb on - strandat 128.007 kb on + strand, within GFF3304at 128.008 kb on - strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.067 kb on + strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.068 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.119 kb on - strand, within GFF3304at 128.269 kb on - strand, within GFF3304at 128.532 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.841 kb on + strand, within GFF3304at 128.842 kb on - strand, within GFF3304at 128.842 kb on - strand, within GFF3304at 128.842 kb on - strand, within GFF3304at 128.978 kb on - strandat 128.983 kb on + strandat 128.983 kb on + strandat 128.984 kb on - strandat 128.984 kb on - strandat 128.984 kb on - strandat 128.984 kb on - strandat 129.025 kb on + strandat 129.025 kb on + strandat 129.025 kb on + strandat 129.025 kb on + strandat 129.026 kb on - strandat 129.026 kb on - strandat 129.026 kb on - strandat 129.026 kb on - strandat 129.122 kb on + strand, within GFF3305at 129.122 kb on + strand, within GFF3305at 129.122 kb on + strand, within GFF3305at 129.123 kb on - strand, within GFF3305at 129.123 kb on - strand, within GFF3305at 129.123 kb on - strand, within GFF3305at 129.273 kb on - strand, within GFF3305at 129.287 kb on + strand, within GFF3305

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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126,880 + GFF3302 0.79 -1.2
126,880 + GFF3302 0.79 -0.2
126,880 + GFF3302 0.79 -0.9
126,880 + GFF3302 0.79 -2.5
126,880 + GFF3302 0.79 -0.9
126,880 + GFF3302 0.79 -2.0
126,880 + GFF3302 0.79 -1.6
126,881 - GFF3302 0.79 -0.6
126,881 - GFF3302 0.79 -1.1
126,881 - GFF3302 0.79 -0.8
126,881 - GFF3302 0.79 -0.4
126,881 - GFF3302 0.79 +0.8
126,881 - GFF3302 0.79 +0.9
126,881 - GFF3302 0.79 -2.7
126,881 - GFF3302 0.79 -0.4
126,881 - GFF3302 0.79 +2.0
126,881 - GFF3302 0.79 +0.0
126,881 - GFF3302 0.79 -1.0
126,881 - GFF3302 0.79 -0.1
126,881 - GFF3302 0.79 -1.0
127,015 + -0.3
127,016 - -1.2
127,037 - -0.1
127,069 + -0.6
127,069 + -1.3
127,069 + -0.9
127,069 + +0.1
127,069 + +1.4
127,069 + -1.0
127,070 - -1.3
127,070 - -0.4
127,070 - -0.5
127,070 - -2.5
127,070 - -0.4
127,070 - -0.5
127,263 - GFF3303 0.33 +1.2
127,316 + GFF3303 0.39 -2.0
127,317 - GFF3303 0.40 +0.5
127,317 - GFF3303 0.40 -3.5
127,317 - GFF3303 0.40 +0.0
127,317 - GFF3303 0.40 +0.6
127,487 - GFF3303 0.62 +0.5
127,487 - GFF3303 0.62 -0.1
127,487 - GFF3303 0.62 +0.9
127,744 - -3.6
128,007 + GFF3304 0.18 +1.2
128,008 - GFF3304 0.18 -0.1
128,067 + GFF3304 0.23 -0.8
128,067 + GFF3304 0.23 -0.4
128,067 + GFF3304 0.23 -0.4
128,068 - GFF3304 0.23 -0.5
128,068 - GFF3304 0.23 -0.3
128,068 - GFF3304 0.23 -0.0
128,068 - GFF3304 0.23 -1.2
128,119 - GFF3304 0.27 +0.2
128,119 - GFF3304 0.27 -0.5
128,119 - GFF3304 0.27 -1.3
128,269 - GFF3304 0.39 +0.2
128,532 + GFF3304 0.60 +1.4
128,841 + GFF3304 0.84 -1.0
128,841 + GFF3304 0.84 +0.2
128,841 + GFF3304 0.84 +1.4
128,841 + GFF3304 0.84 -0.3
128,841 + GFF3304 0.84 -0.7
128,841 + GFF3304 0.84 -0.3
128,842 - GFF3304 0.84 -1.3
128,842 - GFF3304 0.84 -1.7
128,842 - GFF3304 0.84 +0.5
128,978 - -0.2
128,983 + +0.3
128,983 + +0.5
128,984 - +0.5
128,984 - -1.5
128,984 - +1.0
128,984 - -0.1
129,025 + +0.4
129,025 + -0.4
129,025 + +1.0
129,025 + +0.0
129,026 - -0.6
129,026 - -0.7
129,026 - -1.0
129,026 - -0.5
129,122 + GFF3305 0.12 -0.2
129,122 + GFF3305 0.12 -1.4
129,122 + GFF3305 0.12 -0.2
129,123 - GFF3305 0.12 -0.2
129,123 - GFF3305 0.12 -0.4
129,123 - GFF3305 0.12 +0.9
129,273 - GFF3305 0.38 -0.6
129,287 + GFF3305 0.41 -0.2

Or see this region's nucleotide sequence