Strain Fitness in Variovorax sp. SCN45 around GFF2786

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2784 and GFF2785 are separated by 87 nucleotidesGFF2785 and GFF2786 are separated by 85 nucleotidesGFF2786 and GFF2787 are separated by 14 nucleotidesGFF2787 and GFF2788 are separated by 9 nucleotides GFF2784 - Peptidase, M20/M25/M40 family, at 214,003 to 215,358 GFF2784 GFF2785 - hypothetical protein, at 215,446 to 215,898 GFF2785 GFF2786 - Sulfate transporter family protein, at 215,984 to 217,711 GFF2786 GFF2787 - Transcriptional regulator PA1859, LysR family, at 217,726 to 218,610 GFF2787 GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201 GFF2788 Position (kb) 215 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.400 kb on + strandat 215.400 kb on + strandat 215.400 kb on + strandat 215.400 kb on + strandat 215.428 kb on + strandat 215.674 kb on + strand, within GFF2785at 215.675 kb on - strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.692 kb on + strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.693 kb on - strand, within GFF2785at 215.866 kb on + strandat 215.866 kb on + strandat 215.866 kb on + strandat 215.866 kb on + strandat 215.866 kb on + strandat 215.866 kb on + strandat 215.867 kb on - strandat 215.867 kb on - strandat 215.867 kb on - strandat 215.867 kb on - strandat 215.867 kb on - strandat 215.896 kb on + strandat 215.896 kb on + strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.897 kb on - strandat 215.927 kb on + strandat 215.927 kb on + strandat 215.927 kb on + strandat 215.927 kb on + strandat 215.927 kb on + strandat 215.928 kb on - strandat 215.928 kb on - strandat 216.137 kb on + strandat 216.137 kb on + strandat 216.137 kb on + strandat 216.137 kb on + strandat 216.138 kb on - strandat 216.138 kb on - strandat 216.138 kb on - strandat 216.176 kb on + strand, within GFF2786at 216.177 kb on - strand, within GFF2786at 216.659 kb on + strand, within GFF2786at 216.659 kb on + strand, within GFF2786at 216.660 kb on - strand, within GFF2786at 216.716 kb on + strand, within GFF2786at 216.717 kb on - strand, within GFF2786at 216.717 kb on - strand, within GFF2786at 216.717 kb on - strand, within GFF2786at 216.717 kb on - strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.953 kb on + strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 216.954 kb on - strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.037 kb on + strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.038 kb on - strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.196 kb on + strand, within GFF2786at 217.197 kb on - strand, within GFF2786at 217.197 kb on - strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.238 kb on + strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.239 kb on - strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.244 kb on + strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.245 kb on - strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.346 kb on + strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.347 kb on - strand, within GFF2786at 217.625 kb on + strandat 218.080 kb on + strand, within GFF2787at 218.081 kb on - strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.516 kb on + strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.517 kb on - strand, within GFF2787at 218.539 kb on + strandat 218.539 kb on + strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.540 kb on - strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.542 kb on + strandat 218.543 kb on - strandat 218.543 kb on - strandat 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.702 kb on + strand, within GFF2788at 218.703 kb on - strand, within GFF2788

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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215,400 + +0.1
215,400 + +0.5
215,400 + -2.7
215,400 + -1.2
215,428 + +0.1
215,674 + GFF2785 0.50 -0.5
215,675 - GFF2785 0.51 +0.3
215,692 + GFF2785 0.54 -0.3
215,692 + GFF2785 0.54 -0.3
215,692 + GFF2785 0.54 +0.0
215,692 + GFF2785 0.54 +0.0
215,692 + GFF2785 0.54 +0.2
215,692 + GFF2785 0.54 +1.4
215,693 - GFF2785 0.55 -2.6
215,693 - GFF2785 0.55 -0.4
215,693 - GFF2785 0.55 +0.5
215,693 - GFF2785 0.55 -0.3
215,693 - GFF2785 0.55 +1.6
215,693 - GFF2785 0.55 -0.0
215,693 - GFF2785 0.55 -0.8
215,693 - GFF2785 0.55 -1.5
215,866 + -0.7
215,866 + -0.2
215,866 + -1.3
215,866 + -0.6
215,866 + +1.2
215,866 + +0.1
215,867 - -0.7
215,867 - -1.5
215,867 - -1.2
215,867 - -1.9
215,867 - -1.1
215,896 + +0.0
215,896 + -0.6
215,897 - -0.2
215,897 - -3.3
215,897 - +1.0
215,897 - +0.4
215,897 - +1.3
215,897 - -0.6
215,897 - -0.7
215,897 - -1.3
215,897 - -0.3
215,897 - +0.4
215,927 + +0.5
215,927 + -0.6
215,927 + +1.1
215,927 + -1.0
215,927 + -0.5
215,928 - +2.0
215,928 - -1.2
216,137 + +0.6
216,137 + +0.4
216,137 + +0.4
216,137 + -0.6
216,138 - +2.2
216,138 - +1.0
216,138 - +1.2
216,176 + GFF2786 0.11 -0.2
216,177 - GFF2786 0.11 +1.0
216,659 + GFF2786 0.39 +0.3
216,659 + GFF2786 0.39 +0.1
216,660 - GFF2786 0.39 -0.6
216,716 + GFF2786 0.42 -1.7
216,717 - GFF2786 0.42 -0.6
216,717 - GFF2786 0.42 +0.3
216,717 - GFF2786 0.42 -1.7
216,717 - GFF2786 0.42 -0.6
216,953 + GFF2786 0.56 +0.7
216,953 + GFF2786 0.56 -0.4
216,953 + GFF2786 0.56 +0.1
216,953 + GFF2786 0.56 -0.9
216,953 + GFF2786 0.56 -0.1
216,954 - GFF2786 0.56 +0.4
216,954 - GFF2786 0.56 -1.1
216,954 - GFF2786 0.56 +0.3
217,037 + GFF2786 0.61 -0.8
217,037 + GFF2786 0.61 +0.2
217,037 + GFF2786 0.61 +0.1
217,037 + GFF2786 0.61 +0.1
217,037 + GFF2786 0.61 -0.2
217,038 - GFF2786 0.61 -1.0
217,038 - GFF2786 0.61 -0.6
217,038 - GFF2786 0.61 +0.6
217,038 - GFF2786 0.61 +0.1
217,196 + GFF2786 0.70 +0.9
217,196 + GFF2786 0.70 -1.1
217,196 + GFF2786 0.70 -1.2
217,196 + GFF2786 0.70 -0.5
217,196 + GFF2786 0.70 +0.6
217,196 + GFF2786 0.70 +1.2
217,196 + GFF2786 0.70 +0.6
217,197 - GFF2786 0.70 +0.6
217,197 - GFF2786 0.70 +0.9
217,238 + GFF2786 0.73 -0.3
217,238 + GFF2786 0.73 +0.5
217,238 + GFF2786 0.73 +0.4
217,238 + GFF2786 0.73 -0.9
217,238 + GFF2786 0.73 +1.2
217,238 + GFF2786 0.73 -1.0
217,238 + GFF2786 0.73 -0.8
217,238 + GFF2786 0.73 +0.5
217,239 - GFF2786 0.73 -1.6
217,239 - GFF2786 0.73 -0.8
217,239 - GFF2786 0.73 -1.1
217,239 - GFF2786 0.73 +0.0
217,239 - GFF2786 0.73 +0.4
217,239 - GFF2786 0.73 -0.4
217,239 - GFF2786 0.73 +0.3
217,239 - GFF2786 0.73 +1.0
217,239 - GFF2786 0.73 +0.6
217,239 - GFF2786 0.73 +2.0
217,239 - GFF2786 0.73 -1.7
217,244 + GFF2786 0.73 -0.8
217,244 + GFF2786 0.73 -0.8
217,244 + GFF2786 0.73 -0.9
217,244 + GFF2786 0.73 -0.0
217,244 + GFF2786 0.73 +0.2
217,244 + GFF2786 0.73 -0.6
217,245 - GFF2786 0.73 -0.1
217,245 - GFF2786 0.73 +0.1
217,245 - GFF2786 0.73 +0.2
217,245 - GFF2786 0.73 +0.0
217,346 + GFF2786 0.79 +0.4
217,346 + GFF2786 0.79 -0.5
217,346 + GFF2786 0.79 -0.2
217,346 + GFF2786 0.79 -0.7
217,347 - GFF2786 0.79 +0.5
217,347 - GFF2786 0.79 +0.6
217,347 - GFF2786 0.79 +0.4
217,625 + -0.9
218,080 + GFF2787 0.40 -0.5
218,081 - GFF2787 0.40 +0.4
218,516 + GFF2787 0.89 -1.0
218,516 + GFF2787 0.89 -0.9
218,516 + GFF2787 0.89 -0.1
218,516 + GFF2787 0.89 +0.7
218,517 - GFF2787 0.89 -1.0
218,517 - GFF2787 0.89 -1.7
218,517 - GFF2787 0.89 +0.2
218,517 - GFF2787 0.89 +0.0
218,517 - GFF2787 0.89 -0.5
218,517 - GFF2787 0.89 -1.8
218,539 + -0.3
218,539 + +0.0
218,540 - -0.7
218,540 - +0.4
218,540 - +0.5
218,540 - +0.4
218,540 - -0.6
218,540 - -0.5
218,540 - -1.2
218,542 + +1.0
218,542 + -1.7
218,542 + -1.7
218,543 - +0.5
218,543 - +1.0
218,702 + GFF2788 0.14 +0.0
218,702 + GFF2788 0.14 -0.8
218,702 + GFF2788 0.14 -1.0
218,703 - GFF2788 0.14 -0.3

Or see this region's nucleotide sequence