Strain Fitness in Variovorax sp. SCN45 around GFF2707

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
136,276	+		GFF2706	0.75	+1.1
136,276	+		GFF2706	0.75	-0.6
136,507	+		GFF2706	0.83	-0.6
136,508	-		GFF2706	0.83	-0.1
136,570	+		GFF2706	0.86	+0.8
136,571	-		GFF2706	0.86	+1.3
136,571	-		GFF2706	0.86	-0.5
136,571	-		GFF2706	0.86	-0.4
136,880	-				+0.6
136,880	-				+0.9
136,942	+				-0.2
136,943	-				-0.6
137,005	+				+0.1
137,005	+				-0.3
137,005	+				-1.3
137,005	+				-1.3
137,005	+				-2.2
137,005	+				+0.1
137,005	+				-0.6
137,005	+				-0.3
137,006	-				-2.0
137,006	-				-1.3
137,006	-				-0.6
137,006	-				-0.3
137,006	-				-0.6
137,006	-				-0.4
137,132	+				+0.6
137,132	+				-1.5
137,133	-				-0.4
137,133	-				-1.8
137,133	-				-1.6
137,158	+				+1.0
137,159	-				+0.4
137,202	-		GFF2707	0.12	-1.5
137,294	-		GFF2707	0.17	+0.5
137,326	+		GFF2707	0.19	-0.3
137,327	-		GFF2707	0.19	-0.1
137,327	-		GFF2707	0.19	-0.5
137,327	-		GFF2707	0.19	+0.8
137,327	-		GFF2707	0.19	-1.0
137,676	+		GFF2707	0.37	-1.7
137,676	+		GFF2707	0.37	-1.7
137,677	-		GFF2707	0.38	-0.3
137,677	-		GFF2707	0.38	-0.1
137,760	+		GFF2707	0.42	-0.7
137,761	-		GFF2707	0.42	-0.5
137,794	+		GFF2707	0.44	-0.8
137,794	+		GFF2707	0.44	-0.4
137,794	+		GFF2707	0.44	-1.2
137,794	+		GFF2707	0.44	-0.3
137,794	+		GFF2707	0.44	-1.2
137,794	+		GFF2707	0.44	-0.1
137,794	+		GFF2707	0.44	-0.3
137,794	+		GFF2707	0.44	+0.0
137,794	+		GFF2707	0.44	+0.5
137,794	+		GFF2707	0.44	-0.8
137,795	-		GFF2707	0.44	-0.2
137,795	-		GFF2707	0.44	-0.5
137,795	-		GFF2707	0.44	+1.6
137,795	-		GFF2707	0.44	+0.9
137,795	-		GFF2707	0.44	+0.2
137,795	-		GFF2707	0.44	-0.9
137,795	-		GFF2707	0.44	+0.3
137,795	-		GFF2707	0.44	+0.4
137,795	-		GFF2707	0.44	-0.7
137,795	-		GFF2707	0.44	+0.9
137,795	-		GFF2707	0.44	-1.3
137,795	-		GFF2707	0.44	-0.6
137,795	-		GFF2707	0.44	+0.0
137,795	-		GFF2707	0.44	-1.8
137,840	-		GFF2707	0.46	-0.7
137,894	+		GFF2707	0.49	+1.0
137,894	+		GFF2707	0.49	-0.1
137,894	+		GFF2707	0.49	+0.4
137,895	-		GFF2707	0.49	-0.8
137,895	-		GFF2707	0.49	+0.1
137,895	-		GFF2707	0.49	+0.8
137,896	+		GFF2707	0.49	+0.4
137,896	+		GFF2707	0.49	+3.3
137,896	+		GFF2707	0.49	-0.8
137,897	-		GFF2707	0.49	+1.0
137,897	-		GFF2707	0.49	-0.1
137,897	-		GFF2707	0.49	+0.3
137,913	-		GFF2707	0.50	+0.3
137,913	-		GFF2707	0.50	-0.1
137,996	+		GFF2707	0.55	-1.3
137,996	+		GFF2707	0.55	-0.8
137,996	+		GFF2707	0.55	-0.3
137,996	+		GFF2707	0.55	+0.6
137,996	+		GFF2707	0.55	-1.1
137,997	-		GFF2707	0.55	+0.4
137,997	-		GFF2707	0.55	+0.2
137,997	-		GFF2707	0.55	-0.7
137,997	-		GFF2707	0.55	-0.3
137,997	-		GFF2707	0.55	+0.4
138,060	+		GFF2707	0.58	-0.6
138,061	-		GFF2707	0.58	+0.7
138,061	-		GFF2707	0.58	-2.3
138,063	+		GFF2707	0.58	-0.9
138,063	+		GFF2707	0.58	-2.8
138,063	+		GFF2707	0.58	+0.7
138,064	-		GFF2707	0.58	+0.2
138,064	-		GFF2707	0.58	+0.2
138,203	+		GFF2707	0.66	-1.4
138,203	+		GFF2707	0.66	+0.3
138,204	-		GFF2707	0.66	-0.2
138,232	+		GFF2707	0.67	-1.5
138,232	+		GFF2707	0.67	+0.2
138,232	+		GFF2707	0.67	+1.1
138,232	+		GFF2707	0.67	-0.2
138,233	-		GFF2707	0.67	-0.6
138,266	+		GFF2707	0.69	-1.1
138,339	+		GFF2707	0.73	-0.8
138,340	-		GFF2707	0.73	-0.3
138,392	-		GFF2707	0.76	-0.2
138,464	+		GFF2707	0.80	-0.4
138,476	+		GFF2707	0.80	-0.4
138,478	+		GFF2707	0.80	-0.5
138,478	+		GFF2707	0.80	-1.3
138,479	-		GFF2707	0.80	-0.7
138,479	-		GFF2707	0.80	-0.6
138,538	+		GFF2707	0.83	-0.6
138,563	+		GFF2707	0.85	-0.4
138,566	+		GFF2707	0.85	+2.0
138,566	+		GFF2707	0.85	+1.7
138,567	-		GFF2707	0.85	-0.3
138,637	-		GFF2707	0.89	+0.0
138,694	-				-0.3
138,716	-				-1.1
138,716	-				+1.8
138,765	-				-0.5
138,780	-				-1.1
138,803	+				-0.2
138,915	-				-0.6
138,958	+				-0.2
138,959	-				-1.0
138,959	-				-1.2
138,959	-				+0.4
138,962	+				-1.4
138,962	+				+0.2
138,962	+				-0.7
138,962	+				+0.2
138,962	+				+1.0
138,962	+				-1.3
138,962	+				+1.0
138,962	+				+0.7
138,962	+				+1.0
138,962	+				+0.9
138,962	+				-0.5
138,962	+				-0.9
138,962	+				-0.5
138,962	+				+0.2
138,963	-				+0.3
138,963	-				-0.2
138,963	-				-0.9
138,963	-				-0.7
138,963	-				-1.3
138,965	+				-1.0
138,971	+				+0.4
138,972	-				-0.2
138,972	-				-0.2
138,972	-				+0.8
139,084	+				-1.1
139,084	+				-0.3
139,084	+				-0.5
139,084	+				-0.5
139,085	-				-0.6
139,085	-				-1.6
139,085	-				-0.1
139,085	-				+0.5
139,085	-				-1.2
139,085	-				+1.0
139,106	+				+0.0
139,125	-				-0.7
139,181	+				-1.2
139,181	+				-1.4
139,181	+				-0.6
139,181	+				+1.0
139,181	+				-0.2
139,181	+				-0.4
139,181	+				+0.5
139,181	+				-0.8
139,189	+				-0.4
139,189	+				+1.4
139,190	-				-1.4
139,190	-				-0.7
139,190	-				-0.0
139,190	-				-0.4
139,213	+				-1.6
139,213	+				+0.3
139,213	+				-1.6
139,213	+				-0.4
139,213	+				-0.2
139,213	+				+1.0
139,214	-				-0.6
139,214	-				+0.7
139,214	-				+1.3
139,214	-				-0.7
139,214	-				-0.6
139,240	+				+0.3
139,240	+				-1.2
139,250	-				+1.8
139,298	+				+0.4
139,308	-				-0.4
139,349	+				-0.8
139,349	+				+0.3
139,349	+				-0.9
139,349	+				+0.4
139,349	+				-2.5
139,349	+				-0.3
139,349	+				-0.5
139,349	+				-1.5
139,349	+				-1.1
139,349	+				+1.2
139,349	+				-0.2
139,349	+				+1.6
139,349	+				+0.2
139,349	+				+0.0
139,349	+				+0.0
139,349	+				-2.3
139,349	+				+0.4
139,350	-				-0.9
139,350	-				-0.1
139,350	-				-0.8
139,350	-				-0.1
139,350	-				-0.4
139,350	-				+0.7
139,350	-				+0.4
139,350	-				+2.6
139,350	-				+0.7
139,350	-				+0.7
139,350	-				+0.3
139,350	-				+0.4
139,350	-				+0.0
139,382	+				-0.5
139,396	+				+0.4
139,396	+				-0.0
139,396	+				-0.3
139,396	+				-1.0
139,396	+				-0.5
139,396	+				-0.1
139,396	+				-0.8
139,396	+				-0.6
139,396	+				+0.7
139,396	+				-0.4
139,396	+				+2.0
139,396	+				-1.1
139,396	+				-1.2
139,397	-				-1.2
139,397	-				+0.6
139,397	-				+0.0
139,397	-				-0.2
139,397	-				-1.2
139,397	-				+0.2
139,397	-				-0.3
139,397	-				-1.5
139,397	-				-0.7
139,397	-				+0.4
139,397	-				-0.5
139,397	-				-0.3
139,397	-				-0.5
139,397	-				-0.3
139,412	+				-0.1
139,412	+				-0.9
139,413	-				+0.1
139,413	-				+0.3
139,413	-				+1.1
139,413	-				-0.3
139,413	-				-0.7
139,560	+				-0.9
139,657	+				-0.5
139,657	+				-1.1
139,657	+				-0.4
139,657	+				+0.6
139,658	-				-0.2
139,658	-				-1.3
139,658	-				+0.5
139,658	-				-1.1
139,658	-				-1.3
139,703	+				-1.1
139,703	+				-1.0
139,703	+				-0.4
139,704	-				-0.6
139,704	-				-0.1
139,708	+				+0.1
139,709	-				-0.8
139,811	+				-1.9
139,812	-				-0.1
139,812	-				-1.8
139,812	-				+0.2
139,812	-				+0.2
139,813	+				+0.5
139,814	-				-0.2
139,814	-				-0.4
139,834	-				+1.4