Strain Fitness in Variovorax sp. SCN45 around GFF2057

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
104,822	+				+0.2
104,822	+				-0.5
104,823	-				+0.4
104,823	-				-1.6
104,823	-				-0.6
104,823	-				-0.7
104,823	-				+0.9
104,823	-				-0.4
104,823	-				-0.6
104,823	-				-0.9
105,080	-		GFF2056	0.29	-1.0
105,178	+		GFF2056	0.43	+0.1
105,179	-		GFF2056	0.43	-0.9
105,179	-		GFF2056	0.43	+0.3
105,341	-		GFF2056	0.66	+0.9
105,341	-		GFF2056	0.66	+1.0
105,580	+				+0.9
105,580	+				-2.3
105,580	+				-1.2
105,580	+				-0.3
105,581	-				-0.1
105,581	-				-0.4
105,581	-				+0.6
105,710	+		GFF2057	0.10	-1.6
105,710	+		GFF2057	0.10	+0.2
105,710	+		GFF2057	0.10	+1.9
105,711	-		GFF2057	0.10	+1.3
105,711	-		GFF2057	0.10	-1.6
105,914	+		GFF2057	0.31	-1.0
105,914	+		GFF2057	0.31	+0.2
105,914	+		GFF2057	0.31	+0.0
105,914	+		GFF2057	0.31	-0.4
105,914	+		GFF2057	0.31	-0.4
105,915	-		GFF2057	0.31	-0.0
105,915	-		GFF2057	0.31	-1.2
105,915	-		GFF2057	0.31	-0.6
105,915	-		GFF2057	0.31	-0.7
105,915	-		GFF2057	0.31	-0.1
105,915	-		GFF2057	0.31	-0.4
105,915	-		GFF2057	0.31	-0.7
105,971	+		GFF2057	0.37	+0.3
105,972	-		GFF2057	0.37	-0.6
105,989	+		GFF2057	0.39	+0.2
105,989	+		GFF2057	0.39	-2.6
105,989	+		GFF2057	0.39	+0.4
105,989	+		GFF2057	0.39	-2.1
105,990	-		GFF2057	0.39	-1.9
105,990	-		GFF2057	0.39	-1.9
105,990	-		GFF2057	0.39	-1.6
105,990	-		GFF2057	0.39	-0.8
105,990	-		GFF2057	0.39	-0.4
106,208	+		GFF2057	0.62	-0.5
106,208	+		GFF2057	0.62	-0.1
106,256	+		GFF2057	0.67	-0.2
106,418	+		GFF2057	0.83	+1.5
106,418	+		GFF2057	0.83	-0.7
106,418	+		GFF2057	0.83	+1.4
106,418	+		GFF2057	0.83	+0.4
106,418	+		GFF2057	0.83	-1.7
106,419	-		GFF2057	0.83	-1.4
106,419	-		GFF2057	0.83	+0.6
106,419	-		GFF2057	0.83	-0.2
106,419	-		GFF2057	0.83	-0.5
106,419	-		GFF2057	0.83	-0.7
106,419	-		GFF2057	0.83	-0.7
106,437	-		GFF2057	0.85	-0.5
106,437	-		GFF2057	0.85	-0.1
106,568	+				-1.6
106,569	-				-0.2
106,569	-				-0.6
106,614	+				-0.7
106,614	+				+0.6
106,614	+				-1.7
106,614	+				-0.0
106,614	+				+0.3
106,614	+				-0.3
106,614	+				+1.8
106,614	+				-0.3
106,614	+				-0.7
106,614	+				+1.0
106,614	+				+0.2
106,615	-				-1.4
106,615	-				-0.6
106,615	-				+1.5
106,615	-				-0.1
106,615	-				-0.2
106,615	-				-0.2
106,615	-				+0.4
106,615	-				+0.4
106,615	-				-1.2
106,615	-				-1.0
106,615	-				-0.2
106,615	-				+0.7
106,615	-				-0.1
106,641	-				-0.5
106,719	+				-0.1
106,719	+				+0.1
106,719	+				-0.7
106,720	-				-0.4
106,720	-				-0.5
107,032	+		GFF2058	0.51	-0.6
107,032	+		GFF2058	0.51	-0.1
107,032	+		GFF2058	0.51	+1.2
107,032	+		GFF2058	0.51	+1.5
107,032	+		GFF2058	0.51	-0.8
107,032	+		GFF2058	0.51	-0.6
107,033	-		GFF2058	0.52	-0.2
107,038	+		GFF2058	0.52	-0.2
107,038	+		GFF2058	0.52	+0.1
107,038	+		GFF2058	0.52	+0.0
107,038	+		GFF2058	0.52	-0.2
107,038	+		GFF2058	0.52	-0.7
107,038	+		GFF2058	0.52	-1.2
107,038	+		GFF2058	0.52	-0.4
107,038	+		GFF2058	0.52	+0.6
107,038	+		GFF2058	0.52	+1.5
107,038	+		GFF2058	0.52	-0.2
107,039	-		GFF2058	0.52	-0.8
107,039	-		GFF2058	0.52	-0.9
107,039	-		GFF2058	0.52	-0.9
107,039	-		GFF2058	0.52	-0.4
107,039	-		GFF2058	0.52	-0.5
107,039	-		GFF2058	0.52	-0.6
107,039	-		GFF2058	0.52	+0.5
107,039	-		GFF2058	0.52	+0.9
107,039	-		GFF2058	0.52	+0.6
107,039	-		GFF2058	0.52	-0.2