Strain Fitness in Variovorax sp. SCN45 around GFF1965

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
6,405	+				+0.2
6,419	+				-1.3
6,420	-				-1.4
6,420	-				+0.1
6,518	-				-2.1
6,518	-				+0.2
6,620	+		GFF1964	0.13	+0.5
6,620	+		GFF1964	0.13	-1.3
6,621	-		GFF1964	0.13	-0.3
6,621	-		GFF1964	0.13	-0.5
6,621	-		GFF1964	0.13	+0.8
6,636	-		GFF1964	0.16	-0.6
6,665	+		GFF1964	0.20	-2.4
6,665	+		GFF1964	0.20	-0.6
6,665	+		GFF1964	0.20	-0.4
6,665	+		GFF1964	0.20	-0.4
6,666	-		GFF1964	0.20	-0.5
6,666	-		GFF1964	0.20	-0.4
6,666	-		GFF1964	0.20	+0.2
6,666	-		GFF1964	0.20	+0.6
6,666	-		GFF1964	0.20	-0.4
6,666	-		GFF1964	0.20	-2.1
6,710	+		GFF1964	0.28	-1.1
6,710	+		GFF1964	0.28	-0.8
6,710	+		GFF1964	0.28	-1.7
6,710	+		GFF1964	0.28	+0.1
6,710	+		GFF1964	0.28	-0.2
6,710	+		GFF1964	0.28	-0.4
6,710	+		GFF1964	0.28	-0.4
6,710	+		GFF1964	0.28	-0.7
6,710	+		GFF1964	0.28	-0.7
6,710	+		GFF1964	0.28	-0.4
6,710	+		GFF1964	0.28	-0.1
6,710	+		GFF1964	0.28	-1.1
6,710	+		GFF1964	0.28	-0.4
6,710	+		GFF1964	0.28	-0.6
6,710	+		GFF1964	0.28	-0.3
6,710	+		GFF1964	0.28	+0.6
6,710	+		GFF1964	0.28	-0.1
6,710	+		GFF1964	0.28	-2.2
6,710	+		GFF1964	0.28	-0.8
6,711	-		GFF1964	0.28	+0.2
6,711	-		GFF1964	0.28	+0.1
6,711	-		GFF1964	0.28	-0.2
6,711	-		GFF1964	0.28	-1.4
6,711	-		GFF1964	0.28	+2.0
6,711	-		GFF1964	0.28	-0.3
6,711	-		GFF1964	0.28	-0.7
6,711	-		GFF1964	0.28	+0.9
6,711	-		GFF1964	0.28	+0.2
6,711	-		GFF1964	0.28	-0.3
6,711	-		GFF1964	0.28	+0.9
6,879	+		GFF1964	0.55	-0.7
6,879	+		GFF1964	0.55	-0.5
6,879	+		GFF1964	0.55	+0.2
6,879	+		GFF1964	0.55	-0.1
6,879	+		GFF1964	0.55	+0.0
6,879	+		GFF1964	0.55	-0.2
6,879	+		GFF1964	0.55	-0.4
6,879	+		GFF1964	0.55	+1.6
6,879	+		GFF1964	0.55	-1.2
6,880	-		GFF1964	0.55	-0.2
6,880	-		GFF1964	0.55	-1.2
6,880	-		GFF1964	0.55	+1.3
6,880	-		GFF1964	0.55	-0.2
6,880	-		GFF1964	0.55	+1.9
6,880	-		GFF1964	0.55	-0.8
6,880	-		GFF1964	0.55	-0.2
6,880	-		GFF1964	0.55	+1.4
7,043	+		GFF1964	0.81	-0.9
7,043	+		GFF1964	0.81	-0.2
7,043	+		GFF1964	0.81	-0.4
7,043	+		GFF1964	0.81	-0.4
7,043	+		GFF1964	0.81	+0.5
7,044	-		GFF1964	0.81	+0.3
7,044	-		GFF1964	0.81	-0.2
7,044	-		GFF1964	0.81	-0.4
7,144	+				-0.7
7,157	+				-0.2
7,157	+				-1.1
7,157	+				-0.7
7,157	+				-0.8
7,157	+				-0.3
7,157	+				-0.4
7,157	+				+1.5
7,157	+				-1.3
7,157	+				+0.6
7,157	+				-0.9
7,157	+				+0.3
7,158	-				-0.2
7,158	-				+0.1
7,158	-				-0.7
7,158	-				-2.1
7,158	-				-1.4
7,158	-				-0.1
7,158	-				-1.1
7,158	-				-0.4
7,158	-				-0.6
7,198	+				-0.2
7,198	+				+2.2
7,198	+				+0.0
7,199	-				-0.9
7,199	-				+0.2
7,199	-				-0.3
7,199	-				-0.9
7,199	-				-0.2
7,199	-				+0.1
7,199	-				-0.4
7,199	-				+0.2
7,268	+				+2.2
7,269	-				+0.5
7,269	-				+0.9
7,269	-				-1.1
7,285	+				-0.2
7,285	+				-0.3
7,286	-				-0.6
7,286	-				-0.2
7,286	-				+0.3
7,286	-				+0.8
7,663	+		GFF1965	0.36	-1.8
7,663	+		GFF1965	0.36	-0.5
7,664	-		GFF1965	0.36	+0.2
7,664	-		GFF1965	0.36	-0.9
7,664	-		GFF1965	0.36	-1.9
7,664	-		GFF1965	0.36	-0.4
7,664	-		GFF1965	0.36	+0.3
7,664	-		GFF1965	0.36	-0.0
7,664	-		GFF1965	0.36	+0.0
7,664	-		GFF1965	0.36	-0.4
7,664	-		GFF1965	0.36	-0.7
7,664	-		GFF1965	0.36	-0.9
7,978	+		GFF1965	0.72	-0.4
7,978	+		GFF1965	0.72	+1.1
7,978	+		GFF1965	0.72	+0.8
7,978	+		GFF1965	0.72	-0.9
7,978	+		GFF1965	0.72	-0.0
7,979	-		GFF1965	0.72	+1.0
7,979	-		GFF1965	0.72	-0.2
7,979	-		GFF1965	0.72	+0.1
7,979	-		GFF1965	0.72	-2.0
7,979	-		GFF1965	0.72	-0.1
7,979	-		GFF1965	0.72	-0.2
7,979	-		GFF1965	0.72	-0.8
7,979	-		GFF1965	0.72	-0.1
7,979	-		GFF1965	0.72	+0.5
7,979	-		GFF1965	0.72	+0.9
7,979	-		GFF1965	0.72	+0.8
7,979	-		GFF1965	0.72	+0.2
8,348	-				-2.8
8,499	+		GFF1966	0.17	+0.5
8,499	+		GFF1966	0.17	+0.5
8,499	+		GFF1966	0.17	-1.2
8,500	-		GFF1966	0.17	-0.4
8,500	-		GFF1966	0.17	-0.4
8,500	-		GFF1966	0.17	+0.0
8,500	-		GFF1966	0.17	-2.4
8,500	-		GFF1966	0.17	-0.6
8,565	+		GFF1966	0.22	-1.1
8,565	+		GFF1966	0.22	-2.0
8,565	+		GFF1966	0.22	-0.6
8,565	+		GFF1966	0.22	+0.3
8,565	+		GFF1966	0.22	-2.0
8,565	+		GFF1966	0.22	-0.8
8,565	+		GFF1966	0.22	-1.4
8,565	+		GFF1966	0.22	-2.1
8,566	-		GFF1966	0.22	+1.8
8,566	-		GFF1966	0.22	-2.5
8,566	-		GFF1966	0.22	-0.6
8,566	-		GFF1966	0.22	-1.2
8,568	+		GFF1966	0.22	+0.6
8,568	+		GFF1966	0.22	-1.1
8,568	+		GFF1966	0.22	-0.4
8,568	+		GFF1966	0.22	-0.9
8,568	+		GFF1966	0.22	-1.4
8,568	+		GFF1966	0.22	-0.3
8,569	-		GFF1966	0.22	-0.0
8,569	-		GFF1966	0.22	-1.7
8,569	-		GFF1966	0.22	-0.9
8,569	-		GFF1966	0.22	-1.4
8,569	-		GFF1966	0.22	-1.8
8,709	+		GFF1966	0.31	-1.8
8,709	+		GFF1966	0.31	-1.7
8,760	+		GFF1966	0.34	-2.2
8,761	-		GFF1966	0.34	-0.8
9,132	+		GFF1966	0.58	-0.7
9,133	-		GFF1966	0.58	-1.7
9,133	-		GFF1966	0.58	-1.9
9,133	-		GFF1966	0.58	-0.8
9,133	-		GFF1966	0.58	+1.2
9,189	+		GFF1966	0.61	-0.7
9,189	+		GFF1966	0.61	+0.7
9,189	+		GFF1966	0.61	+2.2
9,189	+		GFF1966	0.61	+0.2
9,189	+		GFF1966	0.61	-1.5
9,189	+		GFF1966	0.61	-0.3
9,190	-		GFF1966	0.61	+1.1
9,190	-		GFF1966	0.61	-1.2
9,190	-		GFF1966	0.61	-1.1
9,190	-		GFF1966	0.61	-1.7
9,190	-		GFF1966	0.61	-2.9