Strain Fitness in Variovorax sp. SCN45 around GFF16

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
14,287	+				+0.4
14,334	+		GFF14	0.19	+1.8
14,335	-		GFF14	0.19	-0.4
14,370	+		GFF14	0.28	+0.5
14,370	+		GFF14	0.28	+0.4
14,371	-		GFF14	0.28	-0.8
14,371	-		GFF14	0.28	-0.0
14,557	-		GFF14	0.75	-0.3
14,586	+		GFF14	0.82	+0.8
14,628	+				-0.6
14,629	-				+0.1
14,629	-				-0.8
14,682	+				-0.6
14,682	+				+1.5
14,683	-				-0.1
14,683	-				-1.2
14,683	-				+0.5
14,716	-				-0.1
14,755	+				-0.8
14,755	+				+0.5
14,756	-				-0.5
14,756	-				-0.9
14,774	+				-0.5
14,775	-				-0.2
14,836	+				+0.3
14,836	+				+0.1
14,837	-				-0.2
14,837	-				+0.9
14,887	+		GFF15	0.25	-1.0
14,902	+		GFF15	0.30	-1.2
15,188	+				-0.6
15,188	+				+1.8
15,189	-				-0.4
15,189	-				-0.2
15,251	+				-0.6
15,251	+				+0.7
15,251	+				+0.5
15,252	-				-0.5
15,252	-				+1.2
15,252	-				-0.5
15,252	-				-4.0
15,252	-				-0.4
15,437	+				+0.1
15,437	+				-0.7
15,444	-				+0.2
15,626	+		GFF16	0.15	-0.2
15,626	+		GFF16	0.15	+0.2
16,172	+		GFF16	0.31	+0.8
16,172	+		GFF16	0.31	-0.3
16,172	+		GFF16	0.31	-0.5
16,173	-		GFF16	0.31	-1.0
16,173	-		GFF16	0.31	+0.3
16,173	-		GFF16	0.31	-0.2
16,176	+		GFF16	0.31	-1.5
16,176	+		GFF16	0.31	-0.0
16,177	-		GFF16	0.31	-0.1
16,177	-		GFF16	0.31	-0.2
16,340	+		GFF16	0.35	-0.6
17,008	-		GFF16	0.55	+0.4
17,283	-		GFF16	0.63	+0.0
17,289	-		GFF16	0.63	+0.9
17,289	-		GFF16	0.63	+2.0
17,289	-		GFF16	0.63	+0.7
17,289	-		GFF16	0.63	-0.5
17,289	-		GFF16	0.63	+0.2
17,321	+		GFF16	0.64	-1.4
17,321	+		GFF16	0.64	-1.5
17,321	+		GFF16	0.64	-0.2
17,321	+		GFF16	0.64	+0.4
17,321	+		GFF16	0.64	-0.8
17,321	+		GFF16	0.64	+0.9
17,322	-		GFF16	0.64	-0.5
17,322	-		GFF16	0.64	-0.8
17,322	-		GFF16	0.64	+0.1
17,322	-		GFF16	0.64	-0.1
17,322	-		GFF16	0.64	-0.1
17,369	+		GFF16	0.65	-0.0
17,396	-		GFF16	0.66	+0.3
17,444	+		GFF16	0.68	+0.1
17,444	+		GFF16	0.68	+2.1
17,444	+		GFF16	0.68	+0.0
17,445	-		GFF16	0.68	+1.5
17,469	-		GFF16	0.68	-0.5
17,469	-		GFF16	0.68	+0.6
17,469	-		GFF16	0.68	+0.2
17,549	+		GFF16	0.71	-0.4
17,549	+		GFF16	0.71	+0.5
17,633	+		GFF16	0.73	-1.0
17,633	+		GFF16	0.73	-1.9
17,642	+		GFF16	0.73	-0.2
17,642	+		GFF16	0.73	-0.3
17,642	+		GFF16	0.73	-1.0
17,642	+		GFF16	0.73	-0.1
17,643	-		GFF16	0.73	-0.1
17,643	-		GFF16	0.73	-0.8
17,643	-		GFF16	0.73	-0.5
17,844	-		GFF16	0.79	+0.3
17,844	-		GFF16	0.79	-2.3
17,957	+		GFF16	0.83	+0.5
17,957	+		GFF16	0.83	-0.1
17,957	+		GFF16	0.83	-1.4
17,957	+		GFF16	0.83	-0.2
17,958	-		GFF16	0.83	+0.8
17,958	-		GFF16	0.83	-0.5
18,045	-		GFF16	0.85	-0.4
18,183	-		GFF16	0.89	-0.5
18,183	-		GFF16	0.89	-0.5
18,411	-				-0.4
18,578	-				+1.5
18,653	-				-0.1
18,727	+		GFF17	0.15	+0.4
18,727	+		GFF17	0.15	+0.7
18,728	-		GFF17	0.15	-1.1
18,728	-		GFF17	0.15	+0.3
18,730	+		GFF17	0.15	-0.9
18,731	-		GFF17	0.15	+0.8
18,731	-		GFF17	0.15	-0.2
18,990	+		GFF17	0.35	-0.1
19,213	+		GFF17	0.53	+0.2
19,285	+		GFF17	0.59	-1.4