Strain Fitness in Variovorax sp. SCN45 around GFF1498

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1497 and GFF1498 overlap by 4 nucleotidesGFF1498 and GFF1499 are separated by 6 nucleotides GFF1497 - BUG/TctC family periplasmic protein, at 89,847 to 90,833 GFF1497 GFF1498 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 90,830 to 91,750 GFF1498 GFF1499 - BUG/TctC family periplasmic protein, at 91,757 to 92,743 GFF1499 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 90.055 kb on + strand, within GFF1497at 90.115 kb on - strand, within GFF1497at 90.268 kb on + strand, within GFF1497at 90.269 kb on - strand, within GFF1497at 90.493 kb on + strand, within GFF1497at 90.493 kb on + strand, within GFF1497at 90.494 kb on - strand, within GFF1497at 90.494 kb on - strand, within GFF1497at 90.560 kb on - strand, within GFF1497at 90.870 kb on + strandat 90.870 kb on + strandat 90.871 kb on - strandat 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.104 kb on + strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.105 kb on - strand, within GFF1498at 91.214 kb on + strand, within GFF1498at 91.509 kb on + strand, within GFF1498at 91.509 kb on + strand, within GFF1498at 92.001 kb on + strand, within GFF1499at 92.001 kb on + strand, within GFF1499at 92.001 kb on + strand, within GFF1499at 92.002 kb on - strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.124 kb on + strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.125 kb on - strand, within GFF1499at 92.178 kb on + strand, within GFF1499at 92.178 kb on + strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.179 kb on - strand, within GFF1499at 92.265 kb on + strand, within GFF1499at 92.404 kb on - strand, within GFF1499at 92.419 kb on - strand, within GFF1499at 92.469 kb on + strand, within GFF1499at 92.470 kb on - strand, within GFF1499at 92.653 kb on - strandat 92.653 kb on - strandat 92.737 kb on + strandat 92.737 kb on + strandat 92.737 kb on + strandat 92.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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90,055 + GFF1497 0.21 -0.6
90,115 - GFF1497 0.27 +0.0
90,268 + GFF1497 0.43 -0.4
90,269 - GFF1497 0.43 -1.5
90,493 + GFF1497 0.65 +1.9
90,493 + GFF1497 0.65 -0.1
90,494 - GFF1497 0.66 -2.5
90,494 - GFF1497 0.66 -0.4
90,560 - GFF1497 0.72 +0.8
90,870 + -0.5
90,870 + +0.6
90,871 - -0.1
91,104 + GFF1498 0.30 -0.1
91,104 + GFF1498 0.30 -1.2
91,104 + GFF1498 0.30 -0.8
91,104 + GFF1498 0.30 -0.9
91,105 - GFF1498 0.30 -0.3
91,105 - GFF1498 0.30 -0.2
91,105 - GFF1498 0.30 -0.6
91,214 + GFF1498 0.42 +0.2
91,509 + GFF1498 0.74 +0.6
91,509 + GFF1498 0.74 -0.2
92,001 + GFF1499 0.25 -0.5
92,001 + GFF1499 0.25 -0.0
92,001 + GFF1499 0.25 -0.8
92,002 - GFF1499 0.25 -0.9
92,124 + GFF1499 0.37 +1.2
92,124 + GFF1499 0.37 -1.8
92,124 + GFF1499 0.37 -0.9
92,124 + GFF1499 0.37 -2.5
92,124 + GFF1499 0.37 +0.6
92,124 + GFF1499 0.37 -1.1
92,124 + GFF1499 0.37 -1.5
92,124 + GFF1499 0.37 +1.2
92,124 + GFF1499 0.37 -0.3
92,124 + GFF1499 0.37 -0.6
92,124 + GFF1499 0.37 +0.0
92,124 + GFF1499 0.37 -1.0
92,124 + GFF1499 0.37 -0.1
92,124 + GFF1499 0.37 +0.1
92,124 + GFF1499 0.37 -0.3
92,125 - GFF1499 0.37 -0.6
92,125 - GFF1499 0.37 -0.4
92,125 - GFF1499 0.37 -0.4
92,125 - GFF1499 0.37 -1.1
92,125 - GFF1499 0.37 -0.2
92,125 - GFF1499 0.37 -0.1
92,125 - GFF1499 0.37 +0.2
92,125 - GFF1499 0.37 +0.2
92,178 + GFF1499 0.43 -0.6
92,178 + GFF1499 0.43 -0.1
92,179 - GFF1499 0.43 -1.0
92,179 - GFF1499 0.43 -1.1
92,179 - GFF1499 0.43 -0.1
92,265 + GFF1499 0.51 +1.4
92,404 - GFF1499 0.66 +2.2
92,419 - GFF1499 0.67 +1.5
92,469 + GFF1499 0.72 -2.0
92,470 - GFF1499 0.72 -1.3
92,653 - +0.9
92,653 - -0.1
92,737 + +0.4
92,737 + +0.2
92,737 + -0.7
92,738 - +1.5

Or see this region's nucleotide sequence