Strain Fitness in Variovorax sp. SCN45 around GFF1171

Experiment: M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1170 and GFF1171 are separated by 34 nucleotidesGFF1171 and GFF1172 are separated by 13 nucleotidesGFF1172 and GFF1173 overlap by 4 nucleotides GFF1170 - Possible hypoxanthine oxidase XdhD (EC 1.-.-.-), at 485,559 to 487,889 GFF1170 GFF1171 - Transcriptional regulator, AraC family, at 487,924 to 488,823 GFF1171 GFF1172 - hypothetical protein, at 488,837 to 489,241 GFF1172 GFF1173 - P-hydroxybenzoate hydroxylase (EC 1.14.13.2), at 489,238 to 490,419 GFF1173 Position (kb) 487 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 486.955 kb on + strand, within GFF1170at 487.293 kb on + strand, within GFF1170at 487.293 kb on + strand, within GFF1170at 487.293 kb on + strand, within GFF1170at 487.294 kb on - strand, within GFF1170at 487.294 kb on - strand, within GFF1170at 487.294 kb on - strand, within GFF1170at 487.447 kb on - strand, within GFF1170at 487.485 kb on + strand, within GFF1170at 487.485 kb on + strand, within GFF1170at 487.485 kb on + strand, within GFF1170at 487.485 kb on + strand, within GFF1170at 487.486 kb on - strand, within GFF1170at 487.486 kb on - strand, within GFF1170at 487.486 kb on - strand, within GFF1170at 487.486 kb on - strand, within GFF1170at 487.486 kb on - strand, within GFF1170at 487.581 kb on + strand, within GFF1170at 487.581 kb on + strand, within GFF1170at 487.581 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.596 kb on + strand, within GFF1170at 487.597 kb on - strand, within GFF1170at 487.597 kb on - strand, within GFF1170at 487.641 kb on + strand, within GFF1170at 487.641 kb on + strand, within GFF1170at 487.641 kb on + strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.642 kb on - strand, within GFF1170at 487.972 kb on + strandat 487.973 kb on - strandat 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.038 kb on + strand, within GFF1171at 488.039 kb on - strand, within GFF1171at 488.039 kb on - strand, within GFF1171at 488.039 kb on - strand, within GFF1171at 488.039 kb on - strand, within GFF1171at 488.084 kb on - strand, within GFF1171at 488.084 kb on - strand, within GFF1171at 488.131 kb on + strand, within GFF1171at 488.131 kb on + strand, within GFF1171at 488.132 kb on - strand, within GFF1171at 488.132 kb on - strand, within GFF1171at 488.132 kb on - strand, within GFF1171at 488.132 kb on - strand, within GFF1171at 488.563 kb on + strand, within GFF1171at 488.563 kb on + strand, within GFF1171at 488.563 kb on + strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 488.564 kb on - strand, within GFF1171at 489.053 kb on + strand, within GFF1172at 489.053 kb on + strand, within GFF1172at 489.053 kb on + strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.054 kb on - strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.173 kb on + strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.174 kb on - strand, within GFF1172at 489.239 kb on + strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.240 kb on - strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.266 kb on + strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.267 kb on - strandat 489.311 kb on + strandat 489.470 kb on + strand, within GFF1173at 489.471 kb on - strand, within GFF1173at 489.471 kb on - strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.497 kb on + strand, within GFF1173at 489.498 kb on - strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.755 kb on + strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.756 kb on - strand, within GFF1173at 489.758 kb on + strand, within GFF1173at 489.758 kb on + strand, within GFF1173at 489.759 kb on - strand, within GFF1173at 489.818 kb on + strand, within GFF1173at 489.818 kb on + strand, within GFF1173

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
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486,955 + GFF1170 0.60 -0.4
487,293 + GFF1170 0.74 +0.3
487,293 + GFF1170 0.74 -0.6
487,293 + GFF1170 0.74 -0.2
487,294 - GFF1170 0.74 +0.7
487,294 - GFF1170 0.74 +0.5
487,294 - GFF1170 0.74 -0.7
487,447 - GFF1170 0.81 +0.8
487,485 + GFF1170 0.83 +0.8
487,485 + GFF1170 0.83 -1.0
487,485 + GFF1170 0.83 -0.7
487,485 + GFF1170 0.83 -1.2
487,486 - GFF1170 0.83 +0.2
487,486 - GFF1170 0.83 +1.0
487,486 - GFF1170 0.83 +0.4
487,486 - GFF1170 0.83 +0.4
487,486 - GFF1170 0.83 -1.6
487,581 + GFF1170 0.87 -1.6
487,581 + GFF1170 0.87 -0.2
487,581 + GFF1170 0.87 -1.0
487,596 + GFF1170 0.87 -0.0
487,596 + GFF1170 0.87 -0.5
487,596 + GFF1170 0.87 -0.3
487,596 + GFF1170 0.87 +1.3
487,596 + GFF1170 0.87 +0.1
487,596 + GFF1170 0.87 -1.9
487,596 + GFF1170 0.87 -0.1
487,596 + GFF1170 0.87 -1.5
487,597 - GFF1170 0.87 -0.1
487,597 - GFF1170 0.87 -0.7
487,641 + GFF1170 0.89 -1.5
487,641 + GFF1170 0.89 -0.5
487,641 + GFF1170 0.89 -2.9
487,642 - GFF1170 0.89 +0.8
487,642 - GFF1170 0.89 -0.3
487,642 - GFF1170 0.89 -1.7
487,642 - GFF1170 0.89 -0.0
487,642 - GFF1170 0.89 +0.5
487,642 - GFF1170 0.89 +0.5
487,972 + -1.0
487,973 - -0.1
488,038 + GFF1171 0.13 +0.8
488,038 + GFF1171 0.13 -1.0
488,038 + GFF1171 0.13 +1.3
488,038 + GFF1171 0.13 -2.6
488,038 + GFF1171 0.13 -0.2
488,038 + GFF1171 0.13 -1.2
488,038 + GFF1171 0.13 +1.8
488,038 + GFF1171 0.13 -1.8
488,039 - GFF1171 0.13 +0.5
488,039 - GFF1171 0.13 +0.2
488,039 - GFF1171 0.13 +1.3
488,039 - GFF1171 0.13 -0.2
488,084 - GFF1171 0.18 -0.3
488,084 - GFF1171 0.18 -1.0
488,131 + GFF1171 0.23 -0.8
488,131 + GFF1171 0.23 +0.1
488,132 - GFF1171 0.23 -0.8
488,132 - GFF1171 0.23 -0.4
488,132 - GFF1171 0.23 -0.3
488,132 - GFF1171 0.23 -1.0
488,563 + GFF1171 0.71 -1.2
488,563 + GFF1171 0.71 -0.5
488,563 + GFF1171 0.71 -0.6
488,564 - GFF1171 0.71 -0.3
488,564 - GFF1171 0.71 +0.8
488,564 - GFF1171 0.71 -0.2
488,564 - GFF1171 0.71 -1.2
489,053 + GFF1172 0.53 -1.2
489,053 + GFF1172 0.53 -0.0
489,053 + GFF1172 0.53 +0.6
489,054 - GFF1172 0.54 -1.2
489,054 - GFF1172 0.54 -0.2
489,054 - GFF1172 0.54 -1.5
489,054 - GFF1172 0.54 +0.2
489,054 - GFF1172 0.54 +0.8
489,173 + GFF1172 0.83 -1.2
489,173 + GFF1172 0.83 -0.2
489,173 + GFF1172 0.83 +0.1
489,173 + GFF1172 0.83 -1.0
489,174 - GFF1172 0.83 +0.3
489,174 - GFF1172 0.83 +0.8
489,174 - GFF1172 0.83 -0.2
489,239 + -0.7
489,240 - +1.4
489,240 - +0.3
489,240 - +0.8
489,240 - +0.7
489,240 - +0.5
489,266 + -0.6
489,266 + +1.2
489,266 + -0.7
489,266 + -0.3
489,266 + -0.3
489,266 + -0.7
489,266 + -0.5
489,267 - -0.5
489,267 - +1.0
489,267 - -0.3
489,267 - -0.3
489,311 + -0.2
489,470 + GFF1173 0.20 -0.9
489,471 - GFF1173 0.20 -1.6
489,471 - GFF1173 0.20 -1.2
489,497 + GFF1173 0.22 +0.8
489,497 + GFF1173 0.22 -0.2
489,497 + GFF1173 0.22 +0.7
489,497 + GFF1173 0.22 -1.4
489,498 - GFF1173 0.22 -1.2
489,755 + GFF1173 0.44 +0.2
489,755 + GFF1173 0.44 -1.7
489,755 + GFF1173 0.44 +0.2
489,755 + GFF1173 0.44 -1.4
489,756 - GFF1173 0.44 -0.1
489,756 - GFF1173 0.44 +0.0
489,756 - GFF1173 0.44 -0.2
489,756 - GFF1173 0.44 -0.9
489,756 - GFF1173 0.44 -0.4
489,756 - GFF1173 0.44 -1.0
489,756 - GFF1173 0.44 -0.6
489,756 - GFF1173 0.44 -1.0
489,756 - GFF1173 0.44 -0.1
489,756 - GFF1173 0.44 +1.8
489,756 - GFF1173 0.44 -0.0
489,756 - GFF1173 0.44 +0.5
489,758 + GFF1173 0.44 +2.1
489,758 + GFF1173 0.44 -0.3
489,759 - GFF1173 0.44 +0.3
489,818 + GFF1173 0.49 +1.2
489,818 + GFF1173 0.49 +1.6

Or see this region's nucleotide sequence