Experiment: Mucin from porcine stomach type III 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02215 and HMPREF1181_RS17735 are separated by 120 nucleotides HMPREF1181_RS17735 and HMPREF1181_RS17190 overlap by 42 nucleotides HMPREF1181_RS17190 and HMPREF1181_RS02225 are separated by 43 nucleotides
HMPREF1181_RS02215: HMPREF1181_RS02215 - SDR family oxidoreductase, at 543,544 to 544,353
_RS02215
HMPREF1181_RS17735: HMPREF1181_RS17735 - IS982 family transposase, at 544,474 to 544,944
_RS17735
HMPREF1181_RS17190: HMPREF1181_RS17190 - epoxyqueuosine reductase QueH, at 544,903 to 545,334
_RS17190
HMPREF1181_RS02225: HMPREF1181_RS02225 - serine hydrolase, at 545,378 to 546,871
_RS02225
Position (kb) 544
545 Strain fitness (log2 ratio) -2
-1
0
1 at 543.474 kb on + strand at 543.500 kb on - strand at 543.500 kb on - strand at 543.707 kb on + strand, within HMPREF1181_RS02215 at 543.822 kb on + strand, within HMPREF1181_RS02215 at 543.824 kb on + strand, within HMPREF1181_RS02215 at 543.825 kb on + strand, within HMPREF1181_RS02215 at 543.832 kb on - strand, within HMPREF1181_RS02215 at 543.832 kb on - strand, within HMPREF1181_RS02215 at 543.833 kb on + strand, within HMPREF1181_RS02215 at 543.834 kb on - strand, within HMPREF1181_RS02215 at 543.834 kb on - strand, within HMPREF1181_RS02215 at 543.868 kb on + strand, within HMPREF1181_RS02215 at 544.272 kb on - strand, within HMPREF1181_RS02215 at 544.322 kb on - strand at 544.358 kb on + strand at 544.359 kb on - strand at 544.366 kb on + strand at 544.366 kb on + strand at 544.395 kb on - strand at 544.504 kb on + strand at 544.505 kb on - strand at 544.562 kb on + strand, within HMPREF1181_RS17735 at 544.572 kb on + strand, within HMPREF1181_RS17735 at 544.620 kb on + strand, within HMPREF1181_RS17735 at 544.621 kb on - strand, within HMPREF1181_RS17735 at 544.621 kb on - strand, within HMPREF1181_RS17735 at 544.623 kb on - strand, within HMPREF1181_RS17735 at 544.632 kb on + strand, within HMPREF1181_RS17735 at 544.633 kb on - strand, within HMPREF1181_RS17735 at 544.675 kb on + strand, within HMPREF1181_RS17735 at 544.675 kb on + strand, within HMPREF1181_RS17735 at 544.725 kb on + strand, within HMPREF1181_RS17735 at 544.822 kb on - strand, within HMPREF1181_RS17735 at 544.865 kb on + strand, within HMPREF1181_RS17735 at 544.892 kb on + strand, within HMPREF1181_RS17735 at 544.892 kb on + strand, within HMPREF1181_RS17735 at 544.892 kb on + strand, within HMPREF1181_RS17735 at 544.893 kb on - strand, within HMPREF1181_RS17735 at 544.893 kb on - strand, within HMPREF1181_RS17735 at 544.922 kb on - strand at 544.923 kb on + strand at 544.924 kb on - strand at 545.038 kb on + strand, within HMPREF1181_RS17190 at 545.039 kb on - strand, within HMPREF1181_RS17190 at 545.067 kb on + strand, within HMPREF1181_RS17190 at 545.118 kb on - strand, within HMPREF1181_RS17190 at 545.123 kb on + strand, within HMPREF1181_RS17190 at 545.124 kb on - strand, within HMPREF1181_RS17190 at 545.224 kb on - strand, within HMPREF1181_RS17190 at 545.231 kb on - strand, within HMPREF1181_RS17190 at 545.254 kb on + strand, within HMPREF1181_RS17190 at 545.255 kb on - strand, within HMPREF1181_RS17190 at 545.372 kb on + strand at 545.372 kb on + strand at 545.438 kb on + strand at 545.526 kb on - strand at 545.535 kb on + strand, within HMPREF1181_RS02225 at 545.535 kb on + strand, within HMPREF1181_RS02225 at 545.539 kb on + strand, within HMPREF1181_RS02225 at 545.540 kb on - strand, within HMPREF1181_RS02225 at 545.675 kb on - strand, within HMPREF1181_RS02225 at 545.715 kb on - strand, within HMPREF1181_RS02225 at 545.720 kb on + strand, within HMPREF1181_RS02225 at 545.721 kb on - strand, within HMPREF1181_RS02225 at 545.721 kb on - strand, within HMPREF1181_RS02225 at 545.772 kb on + strand, within HMPREF1181_RS02225 at 545.808 kb on - strand, within HMPREF1181_RS02225 at 545.822 kb on - strand, within HMPREF1181_RS02225 at 545.822 kb on - strand, within HMPREF1181_RS02225 at 545.868 kb on - strand, within HMPREF1181_RS02225 at 545.886 kb on - strand, within HMPREF1181_RS02225 at 545.937 kb on - strand, within HMPREF1181_RS02225 at 545.944 kb on + strand, within HMPREF1181_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/ml (C) remove 543,474 + -0.9 543,500 - -1.8 543,500 - -1.3 543,707 + HMPREF1181_RS02215 0.20 +1.1 543,822 + HMPREF1181_RS02215 0.34 +0.3 543,824 + HMPREF1181_RS02215 0.35 +0.5 543,825 + HMPREF1181_RS02215 0.35 +0.4 543,832 - HMPREF1181_RS02215 0.36 -0.2 543,832 - HMPREF1181_RS02215 0.36 -0.8 543,833 + HMPREF1181_RS02215 0.36 +0.4 543,834 - HMPREF1181_RS02215 0.36 +0.3 543,834 - HMPREF1181_RS02215 0.36 +0.0 543,868 + HMPREF1181_RS02215 0.40 +1.1 544,272 - HMPREF1181_RS02215 0.90 +1.3 544,322 - -0.4 544,358 + +0.9 544,359 - -0.5 544,366 + -0.2 544,366 + -0.5 544,395 - -1.2 544,504 + -0.6 544,505 - -0.4 544,562 + HMPREF1181_RS17735 0.19 +0.6 544,572 + HMPREF1181_RS17735 0.21 +0.0 544,620 + HMPREF1181_RS17735 0.31 +0.4 544,621 - HMPREF1181_RS17735 0.31 -0.8 544,621 - HMPREF1181_RS17735 0.31 +0.1 544,623 - HMPREF1181_RS17735 0.32 +0.7 544,632 + HMPREF1181_RS17735 0.34 -0.4 544,633 - HMPREF1181_RS17735 0.34 -0.9 544,675 + HMPREF1181_RS17735 0.43 +0.9 544,675 + HMPREF1181_RS17735 0.43 +0.3 544,725 + HMPREF1181_RS17735 0.53 -0.2 544,822 - HMPREF1181_RS17735 0.74 -0.4 544,865 + HMPREF1181_RS17735 0.83 +0.2 544,892 + HMPREF1181_RS17735 0.89 -0.8 544,892 + HMPREF1181_RS17735 0.89 +0.1 544,892 + HMPREF1181_RS17735 0.89 +0.6 544,893 - HMPREF1181_RS17735 0.89 -1.9 544,893 - HMPREF1181_RS17735 0.89 +1.0 544,922 - +0.3 544,923 + -0.3 544,924 - +0.9 545,038 + HMPREF1181_RS17190 0.31 -1.5 545,039 - HMPREF1181_RS17190 0.31 +0.6 545,067 + HMPREF1181_RS17190 0.38 -0.7 545,118 - HMPREF1181_RS17190 0.50 -1.1 545,123 + HMPREF1181_RS17190 0.51 +0.4 545,124 - HMPREF1181_RS17190 0.51 -0.4 545,224 - HMPREF1181_RS17190 0.74 +0.1 545,231 - HMPREF1181_RS17190 0.76 -0.7 545,254 + HMPREF1181_RS17190 0.81 +0.3 545,255 - HMPREF1181_RS17190 0.81 -1.2 545,372 + -0.4 545,372 + -2.2 545,438 + -0.9 545,526 - -0.6 545,535 + HMPREF1181_RS02225 0.11 +0.5 545,535 + HMPREF1181_RS02225 0.11 +0.8 545,539 + HMPREF1181_RS02225 0.11 -0.5 545,540 - HMPREF1181_RS02225 0.11 +0.8 545,675 - HMPREF1181_RS02225 0.20 +0.0 545,715 - HMPREF1181_RS02225 0.23 -0.6 545,720 + HMPREF1181_RS02225 0.23 -0.3 545,721 - HMPREF1181_RS02225 0.23 -0.1 545,721 - HMPREF1181_RS02225 0.23 +0.1 545,772 + HMPREF1181_RS02225 0.26 -1.7 545,808 - HMPREF1181_RS02225 0.29 -0.3 545,822 - HMPREF1181_RS02225 0.30 -1.5 545,822 - HMPREF1181_RS02225 0.30 +0.1 545,868 - HMPREF1181_RS02225 0.33 +1.0 545,886 - HMPREF1181_RS02225 0.34 +0.0 545,937 - HMPREF1181_RS02225 0.37 +0.6 545,944 + HMPREF1181_RS02225 0.38 -1.9
Or see this region's nucleotide sequence