Strain Fitness in Variovorax sp. SCN45 around GFF921

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF920 and GFF921 are separated by 47 nucleotidesGFF921 and GFF922 are separated by 22 nucleotidesGFF922 and GFF923 are separated by 177 nucleotides GFF920 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 232,765 to 233,994 GFF920 GFF921 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 234,042 to 235,331 GFF921 GFF922 - hypothetical protein, at 235,354 to 235,749 GFF922 GFF923 - Chromosome partition protein smc, at 235,927 to 236,310 GFF923 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1at 233.089 kb on + strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.090 kb on - strand, within GFF920at 233.099 kb on - strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.224 kb on + strand, within GFF920at 233.303 kb on - strand, within GFF920at 233.383 kb on + strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.384 kb on - strand, within GFF920at 233.458 kb on + strand, within GFF920at 233.472 kb on + strand, within GFF920at 234.301 kb on - strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.309 kb on + strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.310 kb on - strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.822 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.946 kb on - strand, within GFF921at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.406 kb on + strand, within GFF922at 235.406 kb on + strand, within GFF922at 235.407 kb on - strand, within GFF922at 235.407 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.521 kb on - strand, within GFF922at 235.554 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.798 kb on + strandat 235.799 kb on - strandat 235.799 kb on - strandat 235.851 kb on + strandat 235.852 kb on - strandat 235.852 kb on - strandat 235.860 kb on + strandat 235.860 kb on + strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 236.254 kb on + strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.308 kb on + strandat 236.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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233,089 + GFF920 0.26 -0.4
233,090 - GFF920 0.26 -1.0
233,090 - GFF920 0.26 -1.0
233,099 - GFF920 0.27 -0.3
233,224 + GFF920 0.37 -0.4
233,224 + GFF920 0.37 -0.5
233,224 + GFF920 0.37 -0.4
233,303 - GFF920 0.44 +0.2
233,383 + GFF920 0.50 +1.5
233,384 - GFF920 0.50 -0.9
233,384 - GFF920 0.50 -0.4
233,458 + GFF920 0.56 -0.3
233,472 + GFF920 0.57 -0.5
234,301 - GFF921 0.20 +0.6
234,309 + GFF921 0.21 +0.0
234,309 + GFF921 0.21 -0.3
234,309 + GFF921 0.21 -1.3
234,310 - GFF921 0.21 -1.0
234,310 - GFF921 0.21 -1.5
234,310 - GFF921 0.21 -0.3
234,310 - GFF921 0.21 +0.2
234,310 - GFF921 0.21 -0.4
234,310 - GFF921 0.21 -0.9
234,516 + GFF921 0.37 -0.7
234,516 + GFF921 0.37 -1.5
234,516 + GFF921 0.37 -1.3
234,516 + GFF921 0.37 +0.5
234,517 - GFF921 0.37 -0.6
234,517 - GFF921 0.37 -0.4
234,517 - GFF921 0.37 -1.6
234,517 - GFF921 0.37 -0.1
234,696 + GFF921 0.51 +0.3
234,696 + GFF921 0.51 +0.4
234,696 + GFF921 0.51 -1.9
234,696 + GFF921 0.51 -0.4
234,696 + GFF921 0.51 +0.9
234,696 + GFF921 0.51 -0.5
234,696 + GFF921 0.51 +0.1
234,696 + GFF921 0.51 +0.5
234,697 - GFF921 0.51 -0.2
234,697 - GFF921 0.51 +0.0
234,697 - GFF921 0.51 +0.2
234,697 - GFF921 0.51 -1.1
234,697 - GFF921 0.51 -1.4
234,697 - GFF921 0.51 -0.0
234,697 - GFF921 0.51 -1.4
234,697 - GFF921 0.51 +0.0
234,697 - GFF921 0.51 -0.6
234,697 - GFF921 0.51 -0.8
234,822 + GFF921 0.60 -0.1
234,945 + GFF921 0.70 -0.2
234,945 + GFF921 0.70 -0.5
234,946 - GFF921 0.70 -0.8
235,403 + GFF922 0.12 -0.6
235,403 + GFF922 0.12 -1.2
235,403 + GFF922 0.12 -1.3
235,403 + GFF922 0.12 +0.5
235,404 - GFF922 0.13 +0.0
235,404 - GFF922 0.13 -0.4
235,404 - GFF922 0.13 -0.9
235,404 - GFF922 0.13 -1.0
235,404 - GFF922 0.13 +0.3
235,406 + GFF922 0.13 -0.7
235,406 + GFF922 0.13 +0.6
235,407 - GFF922 0.13 -0.8
235,407 - GFF922 0.13 -0.8
235,425 - GFF922 0.18 -2.0
235,425 - GFF922 0.18 -1.4
235,425 - GFF922 0.18 -0.8
235,460 + GFF922 0.27 +0.7
235,460 + GFF922 0.27 -0.7
235,521 - GFF922 0.42 -0.8
235,554 + GFF922 0.51 -0.8
235,562 + GFF922 0.53 -0.2
235,562 + GFF922 0.53 -0.9
235,562 + GFF922 0.53 -0.7
235,562 + GFF922 0.53 +0.1
235,563 - GFF922 0.53 -0.3
235,563 - GFF922 0.53 +0.5
235,798 + -0.4
235,799 - -1.8
235,799 - -0.4
235,851 + -0.6
235,852 - +0.6
235,852 - -0.1
235,860 + +1.5
235,860 + -1.2
235,861 - -0.8
235,861 - -0.3
235,861 - +0.2
235,861 - +1.2
235,861 - -1.6
236,254 + GFF923 0.85 +0.5
236,255 - GFF923 0.85 +0.1
236,255 - GFF923 0.85 -0.2
236,255 - GFF923 0.85 -0.1
236,255 - GFF923 0.85 +0.3
236,255 - GFF923 0.85 +0.8
236,255 - GFF923 0.85 -1.0
236,308 + -1.3
236,309 - -1.5

Or see this region's nucleotide sequence