Strain Fitness in Variovorax sp. SCN45 around GFF763

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF761 and GFF762 are separated by 304 nucleotidesGFF762 and GFF763 are separated by 5 nucleotidesGFF763 and GFF764 are separated by 29 nucleotides GFF761 - FIG00537905: hypothetical protein, at 24,679 to 26,994 GFF761 GFF762 - hypothetical protein, at 27,299 to 27,487 GFF762 GFF763 - Transporter, LysE family, at 27,493 to 28,122 GFF763 GFF764 - hypothetical protein, at 28,152 to 29,831 GFF764 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.930 kb on + strandat 26.930 kb on + strandat 27.021 kb on + strandat 27.021 kb on + strandat 27.021 kb on + strandat 27.021 kb on + strandat 27.022 kb on - strandat 27.022 kb on - strandat 27.080 kb on + strandat 27.081 kb on + strandat 27.081 kb on + strandat 27.081 kb on + strandat 27.114 kb on + strandat 27.114 kb on + strandat 27.114 kb on + strandat 27.115 kb on - strandat 27.115 kb on - strandat 27.115 kb on - strandat 27.115 kb on - strandat 27.115 kb on - strandat 27.115 kb on - strandat 27.278 kb on + strandat 27.278 kb on + strandat 27.278 kb on + strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.407 kb on + strand, within GFF762at 27.467 kb on + strand, within GFF762at 27.671 kb on + strand, within GFF763at 27.671 kb on + strand, within GFF763at 27.672 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.876 kb on - strand, within GFF763at 28.094 kb on + strandat 28.094 kb on + strandat 28.095 kb on - strandat 28.095 kb on - strandat 28.301 kb on - strandat 28.301 kb on - strandat 28.301 kb on - strandat 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.567 kb on + strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.972 kb on + strand, within GFF764at 28.973 kb on - strand, within GFF764at 28.973 kb on - strand, within GFF764at 28.973 kb on - strand, within GFF764at 29.069 kb on - strand, within GFF764

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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26,930 + +0.1
26,930 + -1.1
27,021 + -0.2
27,021 + +0.3
27,021 + -0.3
27,021 + +0.2
27,022 - -0.5
27,022 - +0.4
27,080 + -0.1
27,081 + +0.1
27,081 + +1.1
27,081 + -0.3
27,114 + +0.8
27,114 + -0.4
27,114 + -0.2
27,115 - +0.2
27,115 - -0.1
27,115 - -0.3
27,115 - -0.3
27,115 - +0.6
27,115 - -0.9
27,278 + -1.0
27,278 + -0.1
27,278 + +0.8
27,279 - +0.4
27,279 - +0.3
27,279 - -0.4
27,279 - -1.5
27,279 - -0.1
27,407 + GFF762 0.57 +0.6
27,467 + GFF762 0.89 -1.7
27,671 + GFF763 0.28 -0.3
27,671 + GFF763 0.28 +0.4
27,672 - GFF763 0.28 -1.5
27,858 - GFF763 0.58 -1.8
27,858 - GFF763 0.58 +0.3
27,858 - GFF763 0.58 +1.8
27,858 - GFF763 0.58 +0.0
27,875 + GFF763 0.61 -0.3
27,875 + GFF763 0.61 +0.5
27,875 + GFF763 0.61 -0.5
27,875 + GFF763 0.61 +1.1
27,876 - GFF763 0.61 -0.3
28,094 + -2.8
28,094 + -0.4
28,095 - -0.2
28,095 - -0.1
28,301 - -0.9
28,301 - -0.3
28,301 - -0.5
28,384 + GFF764 0.14 -0.3
28,384 + GFF764 0.14 -0.7
28,384 + GFF764 0.14 -0.6
28,384 + GFF764 0.14 +0.4
28,385 - GFF764 0.14 -0.2
28,385 - GFF764 0.14 +0.1
28,385 - GFF764 0.14 +1.8
28,385 - GFF764 0.14 -0.8
28,385 - GFF764 0.14 +0.0
28,567 + GFF764 0.25 -0.1
28,568 - GFF764 0.25 -1.7
28,568 - GFF764 0.25 +0.0
28,568 - GFF764 0.25 +2.2
28,568 - GFF764 0.25 -0.3
28,568 - GFF764 0.25 -0.2
28,678 + GFF764 0.31 +0.6
28,678 + GFF764 0.31 +0.1
28,678 + GFF764 0.31 -0.5
28,678 + GFF764 0.31 -0.7
28,678 + GFF764 0.31 -0.9
28,679 - GFF764 0.31 +0.0
28,679 - GFF764 0.31 -0.5
28,679 - GFF764 0.31 +0.3
28,679 - GFF764 0.31 -0.1
28,679 - GFF764 0.31 -0.4
28,936 + GFF764 0.47 +1.0
28,936 + GFF764 0.47 +0.5
28,936 + GFF764 0.47 +0.9
28,972 + GFF764 0.49 -0.6
28,973 - GFF764 0.49 +0.7
28,973 - GFF764 0.49 +0.9
28,973 - GFF764 0.49 -0.3
29,069 - GFF764 0.55 +0.0

Or see this region's nucleotide sequence