Strain Fitness in Variovorax sp. SCN45 around GFF7313

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
6,107	-		GFF7311	0.57	-0.1
6,107	-		GFF7311	0.57	-1.0
6,107	-		GFF7311	0.57	-0.2
6,121	+		GFF7311	0.59	-0.5
6,121	+		GFF7311	0.59	-0.1
6,136	+		GFF7311	0.61	-0.1
6,136	+		GFF7311	0.61	-0.3
6,137	-		GFF7311	0.62	-0.7
6,175	+		GFF7311	0.68	-0.8
6,175	+		GFF7311	0.68	-0.9
6,175	+		GFF7311	0.68	-0.1
6,176	-		GFF7311	0.68	+1.7
6,176	-		GFF7311	0.68	+0.1
6,176	-		GFF7311	0.68	+0.4
6,229	+		GFF7311	0.76	-0.0
6,229	+		GFF7311	0.76	+0.1
6,229	+		GFF7311	0.76	-0.5
6,229	+		GFF7311	0.76	-0.3
6,229	+		GFF7311	0.76	-0.3
6,229	+		GFF7311	0.76	-0.0
6,230	-		GFF7311	0.76	+0.6
6,230	-		GFF7311	0.76	+0.3
6,230	-		GFF7311	0.76	-0.5
6,230	-		GFF7311	0.76	-0.4
6,230	-		GFF7311	0.76	-0.1
6,259	+		GFF7311	0.81	+1.1
6,259	+		GFF7311	0.81	+0.6
6,259	+		GFF7311	0.81	+0.0
6,259	+		GFF7311	0.81	+0.4
6,259	+		GFF7311	0.81	-0.2
6,259	+		GFF7311	0.81	+1.3
6,259	+		GFF7311	0.81	+0.2
6,260	-		GFF7311	0.81	-0.2
6,260	-		GFF7311	0.81	-0.6
6,260	-		GFF7311	0.81	+0.2
6,260	-		GFF7311	0.81	-0.7
6,260	-		GFF7311	0.81	+0.8
6,260	-		GFF7311	0.81	+0.6
6,260	-		GFF7311	0.81	-0.6
6,260	-		GFF7311	0.81	-0.6
6,260	-		GFF7311	0.81	+0.6
6,374	-				-1.0
6,374	-				+0.1
6,383	+				-0.2
6,383	+				+0.0
6,383	+				-0.2
6,383	+				-0.9
6,383	+				-0.8
6,383	+				-2.1
6,383	+				-0.3
6,383	+				+0.1
6,383	+				-0.3
6,384	-				-0.8
6,384	-				-0.4
6,384	-				-0.1
6,384	-				-2.0
6,384	-				-0.4
6,384	-				+0.2
6,384	-				-0.0
6,384	-				+0.7
6,384	-				+0.0
6,559	-		GFF7312	0.25	-0.7
6,559	-		GFF7312	0.25	-0.0
6,559	-		GFF7312	0.25	-0.8
6,877	-		GFF7312	0.75	-0.6
6,877	-		GFF7312	0.75	-1.1
7,038	+				-1.1
7,038	+				-0.1
7,038	+				-0.0
7,039	-				+0.4
7,039	-				-0.0
7,039	-				-0.5
7,117	+				+0.3
7,117	+				+0.0
7,117	+				+0.3
7,137	+				-0.2
7,137	+				-0.1
7,137	+				-0.5
7,137	+				-0.2
7,137	+				+0.7
7,137	+				+0.7
7,138	-				-1.2
7,138	-				-1.0
7,138	-				+0.6
7,138	-				+0.1
7,138	-				+0.1
7,138	-				-0.8
7,138	-				+0.7
7,138	-				+0.8
7,138	-				-0.3
7,138	-				-0.2
7,138	-				-0.2
7,138	-				-1.0
7,138	-				+1.0
7,138	-				-0.4
7,257	+		GFF7313	0.21	-1.0
7,257	+		GFF7313	0.21	+0.2
7,257	+		GFF7313	0.21	+0.1
7,257	+		GFF7313	0.21	-1.0
7,257	+		GFF7313	0.21	+0.1
7,257	+		GFF7313	0.21	-1.6
7,257	+		GFF7313	0.21	+0.1
7,257	+		GFF7313	0.21	+0.1
7,257	+		GFF7313	0.21	-0.9
7,257	+		GFF7313	0.21	+0.6
7,257	+		GFF7313	0.21	-0.9
7,257	+		GFF7313	0.21	+0.1
7,258	-		GFF7313	0.21	-2.1
7,258	-		GFF7313	0.21	-0.7
7,258	-		GFF7313	0.21	-0.5
7,258	-		GFF7313	0.21	-0.0
7,258	-		GFF7313	0.21	-1.8
7,258	-		GFF7313	0.21	-0.5
7,258	-		GFF7313	0.21	-0.6
7,258	-		GFF7313	0.21	-1.3
7,258	-		GFF7313	0.21	-1.1
7,258	-		GFF7313	0.21	+0.4
7,258	-		GFF7313	0.21	+1.2
7,258	-		GFF7313	0.21	-3.1
7,258	-		GFF7313	0.21	-0.1
7,258	-		GFF7313	0.21	+0.8
7,258	-		GFF7313	0.21	-0.3
7,258	-		GFF7313	0.21	-1.4
7,258	-		GFF7313	0.21	-0.7
7,258	-		GFF7313	0.21	+0.7
7,263	+		GFF7313	0.22	-1.0
7,263	+		GFF7313	0.22	-0.1
7,263	+		GFF7313	0.22	-0.3
7,263	+		GFF7313	0.22	-0.2
7,263	+		GFF7313	0.22	-0.3
7,263	+		GFF7313	0.22	-0.1
7,264	-		GFF7313	0.22	-0.0
7,264	-		GFF7313	0.22	-0.0
7,264	-		GFF7313	0.22	-1.3
7,264	-		GFF7313	0.22	+1.7
7,264	-		GFF7313	0.22	-1.1
7,264	-		GFF7313	0.22	-0.0
7,264	-		GFF7313	0.22	-0.5
7,264	-		GFF7313	0.22	+2.0
7,264	-		GFF7313	0.22	+1.1
7,333	+		GFF7313	0.32	-0.5
7,333	+		GFF7313	0.32	+0.1
7,333	+		GFF7313	0.32	-0.5
7,334	-		GFF7313	0.32	-0.3
7,334	-		GFF7313	0.32	+0.2
7,431	+		GFF7313	0.46	-0.8
7,432	-		GFF7313	0.46	-0.4
7,432	-		GFF7313	0.46	-0.7
7,432	-		GFF7313	0.46	-0.4
7,432	-		GFF7313	0.46	-0.8
7,432	-		GFF7313	0.46	-0.9
7,445	+		GFF7313	0.48	+0.9
7,445	+		GFF7313	0.48	-2.3
7,589	+		GFF7313	0.68	+0.2
7,657	+		GFF7313	0.77	-1.9
7,657	+		GFF7313	0.77	-1.5
7,658	-		GFF7313	0.77	+0.2
7,658	-		GFF7313	0.77	+0.2
7,789	+				+0.0
7,790	-				+1.4
7,790	-				+0.3
7,803	+				+1.7
7,804	-				+0.4
7,811	+				+0.4
7,812	-				-0.2
7,815	+				-0.8
7,825	+				+0.7
7,825	+				-0.0
7,825	+				-0.1
7,825	+				-0.0
7,863	+				-0.3
7,880	+				-0.5
7,881	-				-0.5
7,895	+				+0.1
7,896	-				+0.5
7,896	-				+0.7
7,896	-				+0.7
7,901	+				-0.4
7,923	+				-1.1
7,924	-				-0.3
7,924	-				+1.4
8,015	-		GFF7314	0.17	+0.2
8,030	+		GFF7314	0.19	-0.7
8,030	+		GFF7314	0.19	+0.7
8,062	+		GFF7314	0.23	+0.5
8,062	+		GFF7314	0.23	-1.7
8,063	-		GFF7314	0.23	-0.6
8,063	-		GFF7314	0.23	+0.3
8,065	+		GFF7314	0.23	+0.1
8,066	-		GFF7314	0.23	+0.1
8,123	+		GFF7314	0.31	-0.0
8,152	+		GFF7314	0.35	+0.4
8,153	-		GFF7314	0.35	+0.5
8,153	-		GFF7314	0.35	+0.9
8,153	-		GFF7314	0.35	-0.7
8,183	+		GFF7314	0.39	-1.1
8,183	+		GFF7314	0.39	-0.3
8,183	+		GFF7314	0.39	-0.1
8,184	-		GFF7314	0.39	-0.1
8,184	-		GFF7314	0.39	+0.2
8,184	-		GFF7314	0.39	-0.6
8,184	-		GFF7314	0.39	-0.9
8,184	-		GFF7314	0.39	-0.6
8,184	-		GFF7314	0.39	-0.9
8,280	+		GFF7314	0.52	-0.8
8,281	-		GFF7314	0.52	-2.5
8,281	-		GFF7314	0.52	-0.4
8,281	-		GFF7314	0.52	-0.0
8,281	-		GFF7314	0.52	-0.4
8,309	+		GFF7314	0.56	+0.2
8,309	+		GFF7314	0.56	+0.2
8,310	-		GFF7314	0.56	-1.1
8,310	-		GFF7314	0.56	-0.7
8,310	-		GFF7314	0.56	-1.6
8,310	-		GFF7314	0.56	-0.6
8,310	-		GFF7314	0.56	+0.9
8,310	-		GFF7314	0.56	-0.5
8,413	+		GFF7314	0.70	+0.7
8,413	+		GFF7314	0.70	-1.2
8,413	+		GFF7314	0.70	-1.6
8,413	+		GFF7314	0.70	+0.3
8,413	+		GFF7314	0.70	-0.6
8,413	+		GFF7314	0.70	+0.1
8,413	+		GFF7314	0.70	-0.6
8,413	+		GFF7314	0.70	-0.7
8,413	+		GFF7314	0.70	+0.3
8,414	-		GFF7314	0.70	+0.2
8,414	-		GFF7314	0.70	-0.1
8,414	-		GFF7314	0.70	-1.9
8,427	+		GFF7314	0.72	+0.1
8,427	+		GFF7314	0.72	+0.0
8,427	+		GFF7314	0.72	-1.8
8,427	+		GFF7314	0.72	+1.2
8,427	+		GFF7314	0.72	-1.8
8,427	+		GFF7314	0.72	-0.3
8,428	-		GFF7314	0.72	+0.7
8,428	-		GFF7314	0.72	+0.1
8,428	-		GFF7314	0.72	-0.2
8,428	-		GFF7314	0.72	-0.7
8,428	-		GFF7314	0.72	-0.4
8,428	-		GFF7314	0.72	-0.5
8,428	-		GFF7314	0.72	+0.4
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	+1.2
8,452	+		GFF7314	0.75	-0.2
8,452	+		GFF7314	0.75	+0.8
8,452	+		GFF7314	0.75	-1.2
8,452	+		GFF7314	0.75	+0.8
8,452	+		GFF7314	0.75	-0.9
8,452	+		GFF7314	0.75	-0.8
8,452	+		GFF7314	0.75	-0.8
8,452	+		GFF7314	0.75	+0.3
8,452	+		GFF7314	0.75	-1.6
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	-1.1
8,452	+		GFF7314	0.75	-0.4
8,452	+		GFF7314	0.75	-2.1
8,452	+		GFF7314	0.75	+0.6
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	-1.1
8,452	+		GFF7314	0.75	-1.1
8,452	+		GFF7314	0.75	-0.3
8,452	+		GFF7314	0.75	+0.7
8,452	+		GFF7314	0.75	+1.7
8,453	-		GFF7314	0.75	-0.6
8,453	-		GFF7314	0.75	-0.0
8,453	-		GFF7314	0.75	-0.0
8,453	-		GFF7314	0.75	-0.7
8,453	-		GFF7314	0.75	-0.2
8,453	-		GFF7314	0.75	+0.7
8,453	-		GFF7314	0.75	-0.4
8,453	-		GFF7314	0.75	-1.8
8,453	-		GFF7314	0.75	-0.2
8,453	-		GFF7314	0.75	-1.5
8,453	-		GFF7314	0.75	+0.7
8,453	-		GFF7314	0.75	-0.0
8,453	-		GFF7314	0.75	-0.7
8,453	-		GFF7314	0.75	+0.3
8,453	-		GFF7314	0.75	+0.8
8,453	-		GFF7314	0.75	+1.4
8,453	-		GFF7314	0.75	-0.5
8,453	-		GFF7314	0.75	+0.4
8,453	-		GFF7314	0.75	-1.1
8,453	-		GFF7314	0.75	+0.1
8,453	-		GFF7314	0.75	-0.6
8,453	-		GFF7314	0.75	-0.1
8,467	-		GFF7314	0.77	+1.2
8,494	+		GFF7314	0.81	-1.4
8,494	+		GFF7314	0.81	-0.8
8,494	+		GFF7314	0.81	-0.7
8,494	+		GFF7314	0.81	-0.9
8,494	+		GFF7314	0.81	-0.6
8,494	+		GFF7314	0.81	+1.7
8,494	+		GFF7314	0.81	-2.2
8,494	+		GFF7314	0.81	-0.1
8,494	+		GFF7314	0.81	+0.2
8,495	-		GFF7314	0.81	+1.2
8,495	-		GFF7314	0.81	-0.6
8,495	-		GFF7314	0.81	+1.7
8,495	-		GFF7314	0.81	-0.0
8,495	-		GFF7314	0.81	+0.8
8,495	-		GFF7314	0.81	+0.1
8,495	-		GFF7314	0.81	-0.3
8,495	-		GFF7314	0.81	-1.8
8,495	-		GFF7314	0.81	+0.0
8,495	-		GFF7314	0.81	+0.4
8,495	-		GFF7314	0.81	-0.6
8,495	-		GFF7314	0.81	-1.1
8,558	+		GFF7314	0.89	-0.5
8,558	+		GFF7314	0.89	+1.9
8,559	-		GFF7314	0.89	+0.1
8,726	-		GFF7315	0.11	+0.5
8,735	+		GFF7315	0.13	-0.3
8,735	+		GFF7315	0.13	-0.2
8,736	-		GFF7315	0.13	-1.5