Strain Fitness in Variovorax sp. SCN45 around GFF6992

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6990 and GFF6991 are separated by 434 nucleotidesGFF6991 and GFF6992 overlap by 4 nucleotidesGFF6992 and GFF6993 are separated by 1 nucleotidesGFF6993 and GFF6994 overlap by 4 nucleotides GFF6990 - hypothetical protein, at 8,160 to 8,591 GFF6990 GFF6991 - no description, at 9,026 to 9,541 GFF6991 GFF6992 - Flagellum-specific ATP synthase FliI, at 9,538 to 10,929 GFF6992 GFF6993 - no description, at 10,931 to 11,773 GFF6993 GFF6994 - hypothetical protein, at 11,770 to 12,390 GFF6994 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1at 9.492 kb on - strandat 9.492 kb on - strandat 9.492 kb on - strandat 9.703 kb on + strand, within GFF6992at 10.170 kb on - strand, within GFF6992at 10.679 kb on + strand, within GFF6992at 10.718 kb on - strand, within GFF6992at 11.788 kb on - strandat 11.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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9,492 - -0.3
9,492 - +0.4
9,492 - +0.6
9,703 + GFF6992 0.12 -0.6
10,170 - GFF6992 0.45 -0.6
10,679 + GFF6992 0.82 -3.1
10,718 - GFF6992 0.85 -0.3
11,788 - -0.1
11,788 - +0.3

Or see this region's nucleotide sequence