Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6937 and GFF6938 overlap by 4 nucleotides GFF6938 and GFF6939 overlap by 4 nucleotides
GFF6937 - Membrane protein, at 11,760 to 12,845
GFF6937
GFF6938 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 12,842 to 14,341
GFF6938
GFF6939 - ABC-type antimicrobial peptide transport system, permease component, at 14,338 to 15,480
GFF6939
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.862 kb on + strand at 11.863 kb on - strand at 11.884 kb on - strand, within GFF6937 at 11.899 kb on - strand, within GFF6937 at 11.953 kb on - strand, within GFF6937 at 12.222 kb on + strand, within GFF6937 at 12.322 kb on - strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.378 kb on + strand, within GFF6937 at 12.378 kb on + strand, within GFF6937 at 12.379 kb on - strand, within GFF6937 at 12.400 kb on - strand, within GFF6937 at 12.429 kb on + strand, within GFF6937 at 12.429 kb on + strand, within GFF6937 at 12.489 kb on + strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.519 kb on + strand, within GFF6937 at 12.519 kb on + strand, within GFF6937 at 12.585 kb on + strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.804 kb on + strand at 12.804 kb on + strand at 12.804 kb on + strand at 12.972 kb on - strand at 13.277 kb on + strand, within GFF6938 at 13.277 kb on + strand, within GFF6938 at 13.277 kb on + strand, within GFF6938 at 13.311 kb on - strand, within GFF6938 at 13.311 kb on - strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.452 kb on - strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.911 kb on - strand, within GFF6938 at 14.175 kb on - strand, within GFF6938 at 14.345 kb on - strand at 14.486 kb on - strand, within GFF6939 at 14.572 kb on + strand, within GFF6939 at 14.573 kb on - strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.666 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.914 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.962 kb on + strand, within GFF6939 at 15.076 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.169 kb on + strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 11,862 + -1.0 11,863 - +0.8 11,884 - GFF6937 0.11 +0.6 11,899 - GFF6937 0.13 -1.6 11,953 - GFF6937 0.18 -0.4 12,222 + GFF6937 0.43 -2.3 12,322 - GFF6937 0.52 -0.0 12,351 + GFF6937 0.54 -0.3 12,351 + GFF6937 0.54 -0.1 12,351 + GFF6937 0.54 -2.3 12,378 + GFF6937 0.57 -1.4 12,378 + GFF6937 0.57 -0.1 12,379 - GFF6937 0.57 -0.6 12,400 - GFF6937 0.59 -0.8 12,429 + GFF6937 0.62 +0.9 12,429 + GFF6937 0.62 +0.2 12,489 + GFF6937 0.67 +0.7 12,490 - GFF6937 0.67 +1.7 12,490 - GFF6937 0.67 -0.3 12,490 - GFF6937 0.67 -0.8 12,519 + GFF6937 0.70 -0.1 12,519 + GFF6937 0.70 -0.7 12,585 + GFF6937 0.76 -0.7 12,586 - GFF6937 0.76 +0.2 12,586 - GFF6937 0.76 +0.1 12,586 - GFF6937 0.76 +0.9 12,586 - GFF6937 0.76 -0.2 12,700 - GFF6937 0.87 +0.2 12,700 - GFF6937 0.87 +0.2 12,700 - GFF6937 0.87 -0.5 12,700 - GFF6937 0.87 -0.7 12,804 + +0.9 12,804 + -0.8 12,804 + -1.4 12,972 - +0.8 13,277 + GFF6938 0.29 -0.4 13,277 + GFF6938 0.29 -0.5 13,277 + GFF6938 0.29 -0.8 13,311 - GFF6938 0.31 +0.8 13,311 - GFF6938 0.31 -0.4 13,451 + GFF6938 0.41 +1.3 13,451 + GFF6938 0.41 +0.4 13,452 - GFF6938 0.41 +0.1 13,547 + GFF6938 0.47 +0.2 13,547 + GFF6938 0.47 -0.1 13,911 - GFF6938 0.71 -1.3 14,175 - GFF6938 0.89 -0.1 14,345 - -1.1 14,486 - GFF6939 0.13 -0.7 14,572 + GFF6939 0.20 -1.0 14,573 - GFF6939 0.21 -2.1 14,611 + GFF6939 0.24 -0.6 14,611 + GFF6939 0.24 -1.1 14,612 - GFF6939 0.24 +0.4 14,612 - GFF6939 0.24 -0.7 14,612 - GFF6939 0.24 -0.3 14,665 + GFF6939 0.29 -0.3 14,665 + GFF6939 0.29 -0.8 14,666 - GFF6939 0.29 +1.6 14,698 - GFF6939 0.31 +1.5 14,698 - GFF6939 0.31 -0.3 14,914 + GFF6939 0.50 +1.7 14,932 + GFF6939 0.52 -0.9 14,932 + GFF6939 0.52 -0.6 14,962 + GFF6939 0.55 -0.8 15,076 + GFF6939 0.65 -0.1 15,079 + GFF6939 0.65 -0.2 15,079 + GFF6939 0.65 +2.2 15,079 + GFF6939 0.65 -0.2 15,079 + GFF6939 0.65 -0.3 15,079 + GFF6939 0.65 -0.0 15,080 - GFF6939 0.65 -1.1 15,080 - GFF6939 0.65 -0.5 15,080 - GFF6939 0.65 +1.7 15,085 + GFF6939 0.65 -0.4 15,085 + GFF6939 0.65 +0.9 15,086 - GFF6939 0.65 +0.7 15,086 - GFF6939 0.65 -0.7 15,169 + GFF6939 0.73 -1.3 15,170 - GFF6939 0.73 -1.1 15,170 - GFF6939 0.73 -0.5 15,170 - GFF6939 0.73 -1.1
Or see this region's nucleotide sequence