Strain Fitness in Variovorax sp. SCN45 around GFF6893

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6891 and GFF6892 are separated by 50 nucleotidesGFF6892 and GFF6893 overlap by 4 nucleotidesGFF6893 and GFF6894 are separated by 15 nucleotidesGFF6894 and GFF6895 are separated by 5 nucleotides GFF6891 - Phenazine biosynthesis protein PhzF like, at 24,558 to 25,394 GFF6891 GFF6892 - Uncharacterized glutathione S-transferase-like protein, at 25,445 to 26,086 GFF6892 GFF6893 - Phenazine biosynthesis protein PhzF like, at 26,083 to 27,015 GFF6893 GFF6894 - FIG00454405: hypothetical protein, at 27,031 to 27,723 GFF6894 GFF6895 - L-lysine permease, at 27,729 to 28,361 GFF6895 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.197 kb on + strand, within GFF6891at 25.197 kb on + strand, within GFF6891at 25.255 kb on + strand, within GFF6891at 25.574 kb on + strand, within GFF6892at 25.574 kb on + strand, within GFF6892at 25.575 kb on - strand, within GFF6892at 25.670 kb on + strand, within GFF6892at 25.670 kb on + strand, within GFF6892at 25.670 kb on + strand, within GFF6892at 25.704 kb on - strand, within GFF6892at 25.704 kb on - strand, within GFF6892at 25.803 kb on + strand, within GFF6892at 25.804 kb on - strand, within GFF6892at 25.804 kb on - strand, within GFF6892at 25.907 kb on + strand, within GFF6892at 25.908 kb on - strand, within GFF6892at 25.908 kb on - strand, within GFF6892at 25.908 kb on - strand, within GFF6892at 25.908 kb on - strand, within GFF6892at 25.991 kb on + strand, within GFF6892at 26.027 kb on + strandat 26.027 kb on + strandat 26.140 kb on + strandat 26.752 kb on + strand, within GFF6893at 26.752 kb on + strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.753 kb on - strand, within GFF6893at 26.890 kb on + strand, within GFF6893at 26.891 kb on - strand, within GFF6893at 26.891 kb on - strand, within GFF6893at 26.935 kb on + strandat 26.935 kb on + strandat 26.935 kb on + strandat 26.935 kb on + strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 26.936 kb on - strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.013 kb on + strandat 27.014 kb on - strandat 27.014 kb on - strandat 27.014 kb on - strandat 27.199 kb on + strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.200 kb on - strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.390 kb on + strand, within GFF6894at 27.391 kb on - strand, within GFF6894at 27.391 kb on - strand, within GFF6894at 27.487 kb on + strand, within GFF6894at 27.487 kb on + strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.488 kb on - strand, within GFF6894at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.807 kb on + strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.808 kb on - strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.975 kb on + strand, within GFF6895at 27.976 kb on - strand, within GFF6895at 27.976 kb on - strand, within GFF6895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
remove
25,197 + GFF6891 0.76 -0.3
25,197 + GFF6891 0.76 -0.9
25,255 + GFF6891 0.83 +0.4
25,574 + GFF6892 0.20 -0.4
25,574 + GFF6892 0.20 -1.1
25,575 - GFF6892 0.20 -1.1
25,670 + GFF6892 0.35 -0.2
25,670 + GFF6892 0.35 +0.8
25,670 + GFF6892 0.35 +0.1
25,704 - GFF6892 0.40 -0.5
25,704 - GFF6892 0.40 -0.4
25,803 + GFF6892 0.56 +0.5
25,804 - GFF6892 0.56 -0.3
25,804 - GFF6892 0.56 -0.3
25,907 + GFF6892 0.72 +1.2
25,908 - GFF6892 0.72 +0.7
25,908 - GFF6892 0.72 -0.3
25,908 - GFF6892 0.72 -0.1
25,908 - GFF6892 0.72 -0.7
25,991 + GFF6892 0.85 -0.3
26,027 + -0.1
26,027 + +0.4
26,140 + -0.2
26,752 + GFF6893 0.72 -0.6
26,752 + GFF6893 0.72 -0.8
26,753 - GFF6893 0.72 +2.1
26,753 - GFF6893 0.72 +2.3
26,753 - GFF6893 0.72 +1.4
26,890 + GFF6893 0.86 +0.4
26,891 - GFF6893 0.87 +0.3
26,891 - GFF6893 0.87 +0.3
26,935 + +0.3
26,935 + -0.7
26,935 + -1.5
26,935 + +2.1
26,936 - +0.2
26,936 - +0.7
26,936 - -0.6
26,936 - +0.6
26,936 - +0.1
26,936 - -0.1
26,936 - -0.0
26,936 - +0.0
26,936 - -0.5
27,013 + -0.2
27,013 + -2.1
27,013 + +0.2
27,013 + -0.4
27,013 + -0.3
27,013 + +1.7
27,014 - +0.8
27,014 - -0.6
27,014 - -0.4
27,199 + GFF6894 0.24 +0.5
27,200 - GFF6894 0.24 -0.7
27,200 - GFF6894 0.24 -1.4
27,200 - GFF6894 0.24 +0.4
27,200 - GFF6894 0.24 -0.3
27,390 + GFF6894 0.52 +0.2
27,390 + GFF6894 0.52 -0.4
27,390 + GFF6894 0.52 +0.4
27,390 + GFF6894 0.52 +0.5
27,390 + GFF6894 0.52 +0.3
27,391 - GFF6894 0.52 +0.6
27,391 - GFF6894 0.52 -1.3
27,487 + GFF6894 0.66 -0.1
27,487 + GFF6894 0.66 -0.6
27,488 - GFF6894 0.66 +0.1
27,488 - GFF6894 0.66 -0.2
27,488 - GFF6894 0.66 +0.2
27,488 - GFF6894 0.66 -0.1
27,807 + GFF6895 0.12 -0.3
27,807 + GFF6895 0.12 -0.5
27,807 + GFF6895 0.12 -0.8
27,807 + GFF6895 0.12 -1.0
27,807 + GFF6895 0.12 -1.8
27,807 + GFF6895 0.12 +0.5
27,807 + GFF6895 0.12 -1.4
27,807 + GFF6895 0.12 +0.1
27,807 + GFF6895 0.12 -0.2
27,807 + GFF6895 0.12 -1.2
27,807 + GFF6895 0.12 -0.7
27,807 + GFF6895 0.12 +2.3
27,807 + GFF6895 0.12 +2.1
27,807 + GFF6895 0.12 -0.5
27,807 + GFF6895 0.12 +1.3
27,807 + GFF6895 0.12 -0.1
27,807 + GFF6895 0.12 -0.0
27,808 - GFF6895 0.12 -0.2
27,808 - GFF6895 0.12 +0.7
27,808 - GFF6895 0.12 +0.2
27,808 - GFF6895 0.12 -0.4
27,808 - GFF6895 0.12 -0.6
27,808 - GFF6895 0.12 +0.2
27,808 - GFF6895 0.12 -0.0
27,808 - GFF6895 0.12 -1.3
27,808 - GFF6895 0.12 -0.9
27,808 - GFF6895 0.12 +0.3
27,808 - GFF6895 0.12 -0.8
27,808 - GFF6895 0.12 -1.1
27,808 - GFF6895 0.12 -0.6
27,808 - GFF6895 0.12 +0.1
27,808 - GFF6895 0.12 +0.2
27,808 - GFF6895 0.12 -2.2
27,975 + GFF6895 0.39 -0.4
27,975 + GFF6895 0.39 -3.1
27,975 + GFF6895 0.39 -0.8
27,975 + GFF6895 0.39 -1.1
27,976 - GFF6895 0.39 +0.3
27,976 - GFF6895 0.39 -1.0

Or see this region's nucleotide sequence