Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6830 and GFF6831 are separated by 19 nucleotides GFF6831 and GFF6832 are separated by 63 nucleotides
GFF6830 - penicillin amidase family protein, at 14,868 to 17,288
GFF6830
GFF6831 - hypothetical protein, at 17,308 to 17,958
GFF6831
GFF6832 - DnaJ-class molecular chaperone CbpA, at 18,022 to 18,984
GFF6832
Position (kb) 17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 16.389 kb on + strand, within GFF6830 at 16.389 kb on + strand, within GFF6830 at 16.389 kb on + strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 16.390 kb on - strand, within GFF6830 at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.064 kb on + strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.076 kb on + strand at 17.076 kb on + strand at 17.076 kb on + strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.077 kb on - strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.088 kb on + strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.089 kb on - strand at 17.145 kb on + strand at 17.146 kb on - strand at 17.146 kb on - strand at 17.181 kb on + strand at 17.182 kb on - strand at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.410 kb on + strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.411 kb on - strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.809 kb on + strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.810 kb on - strand, within GFF6831 at 17.956 kb on + strand at 17.956 kb on + strand at 17.957 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 17.957 kb on - strand at 18.025 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.037 kb on + strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.040 kb on + strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.041 kb on - strand at 18.094 kb on + strand at 18.094 kb on + strand at 18.095 kb on - strand at 18.095 kb on - strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.115 kb on + strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.116 kb on - strand at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.185 kb on + strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.186 kb on - strand, within GFF6832 at 18.214 kb on + strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.215 kb on - strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.406 kb on + strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.407 kb on - strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.643 kb on + strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.644 kb on - strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.676 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.700 kb on + strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.701 kb on - strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.868 kb on + strand, within GFF6832 at 18.869 kb on - strand, within GFF6832 at 18.881 kb on - strand, within GFF6832 at 18.925 kb on + strand at 18.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 16,389 + GFF6830 0.63 -1.2 16,389 + GFF6830 0.63 -1.0 16,389 + GFF6830 0.63 -0.9 16,390 - GFF6830 0.63 -0.2 16,390 - GFF6830 0.63 -0.7 16,390 - GFF6830 0.63 +0.4 16,390 - GFF6830 0.63 +0.6 16,390 - GFF6830 0.63 -0.7 16,390 - GFF6830 0.63 -0.5 17,064 + -0.6 17,064 + +0.1 17,064 + -0.2 17,064 + -0.0 17,064 + -0.8 17,065 - +0.1 17,065 - -1.7 17,065 - -0.4 17,065 - -0.5 17,065 - -0.1 17,065 - -0.8 17,076 + -0.9 17,076 + -0.1 17,076 + +0.2 17,077 - +0.3 17,077 - +0.5 17,077 - -1.7 17,077 - -0.5 17,077 - -0.7 17,077 - -1.9 17,088 + -2.4 17,088 + -1.2 17,088 + +0.3 17,088 + -0.4 17,088 + -1.2 17,088 + +2.1 17,088 + +0.3 17,088 + -2.0 17,088 + -0.1 17,088 + -0.1 17,088 + -0.3 17,088 + -0.9 17,088 + -1.1 17,089 - -2.0 17,089 - -0.2 17,089 - -1.7 17,089 - -1.0 17,089 - -0.7 17,089 - -1.7 17,089 - -0.1 17,145 + -0.8 17,146 - -1.0 17,146 - -0.2 17,181 + +0.2 17,182 - -0.5 17,410 + GFF6831 0.16 -0.1 17,410 + GFF6831 0.16 +0.3 17,410 + GFF6831 0.16 -0.4 17,410 + GFF6831 0.16 +0.0 17,410 + GFF6831 0.16 -0.1 17,410 + GFF6831 0.16 -1.1 17,410 + GFF6831 0.16 +0.1 17,411 - GFF6831 0.16 -0.8 17,411 - GFF6831 0.16 +1.3 17,411 - GFF6831 0.16 -1.0 17,411 - GFF6831 0.16 +0.6 17,809 + GFF6831 0.77 -0.4 17,809 + GFF6831 0.77 +2.7 17,809 + GFF6831 0.77 +0.4 17,809 + GFF6831 0.77 +0.0 17,809 + GFF6831 0.77 +0.0 17,809 + GFF6831 0.77 +0.2 17,809 + GFF6831 0.77 -2.4 17,810 - GFF6831 0.77 -0.2 17,810 - GFF6831 0.77 -0.1 17,810 - GFF6831 0.77 -0.1 17,810 - GFF6831 0.77 -0.1 17,810 - GFF6831 0.77 -0.2 17,810 - GFF6831 0.77 +0.3 17,810 - GFF6831 0.77 +1.1 17,956 + -0.3 17,956 + -0.9 17,957 - +0.2 17,957 - -1.0 17,957 - +0.0 17,957 - -1.5 18,025 + +1.6 18,037 + -1.5 18,037 + -0.4 18,037 + -0.0 18,037 + -1.8 18,037 + -2.0 18,037 + +0.8 18,037 + +1.1 18,037 + -0.5 18,037 + +0.5 18,037 + -0.2 18,038 - +0.5 18,038 - -0.8 18,038 - +0.1 18,038 - -0.4 18,038 - +0.0 18,038 - +0.9 18,038 - -0.2 18,040 + -0.2 18,040 + -1.1 18,040 + -0.4 18,040 + -1.0 18,040 + -0.3 18,041 - +0.4 18,041 - -1.4 18,041 - -1.2 18,041 - -0.2 18,041 - -0.7 18,041 - -1.2 18,094 + -2.0 18,094 + -0.4 18,095 - -1.2 18,095 - +0.2 18,115 + -0.3 18,115 + -0.5 18,115 + -0.6 18,115 + +1.9 18,115 + +0.5 18,115 + -1.9 18,115 + +0.3 18,116 - +0.9 18,116 - +1.0 18,116 - -0.5 18,116 - -1.5 18,116 - +0.6 18,185 + GFF6832 0.17 -0.1 18,185 + GFF6832 0.17 +0.5 18,185 + GFF6832 0.17 -0.6 18,185 + GFF6832 0.17 -0.0 18,185 + GFF6832 0.17 +0.0 18,185 + GFF6832 0.17 -0.1 18,186 - GFF6832 0.17 +0.5 18,186 - GFF6832 0.17 +0.0 18,186 - GFF6832 0.17 -0.7 18,186 - GFF6832 0.17 +0.1 18,186 - GFF6832 0.17 -0.2 18,186 - GFF6832 0.17 +0.7 18,214 + GFF6832 0.20 -0.2 18,215 - GFF6832 0.20 -0.5 18,215 - GFF6832 0.20 +0.8 18,406 + GFF6832 0.40 -1.3 18,406 + GFF6832 0.40 +0.3 18,406 + GFF6832 0.40 -2.1 18,406 + GFF6832 0.40 +0.8 18,406 + GFF6832 0.40 +1.8 18,406 + GFF6832 0.40 -0.4 18,406 + GFF6832 0.40 -1.2 18,407 - GFF6832 0.40 -0.9 18,407 - GFF6832 0.40 +0.5 18,407 - GFF6832 0.40 +0.1 18,407 - GFF6832 0.40 -0.4 18,407 - GFF6832 0.40 -0.5 18,407 - GFF6832 0.40 +3.0 18,643 + GFF6832 0.64 -0.4 18,643 + GFF6832 0.64 -0.1 18,643 + GFF6832 0.64 -0.5 18,644 - GFF6832 0.65 +1.7 18,644 - GFF6832 0.65 +1.0 18,676 + GFF6832 0.68 +0.1 18,676 + GFF6832 0.68 -0.5 18,676 + GFF6832 0.68 +1.3 18,700 + GFF6832 0.70 -0.4 18,700 + GFF6832 0.70 +0.2 18,700 + GFF6832 0.70 +0.8 18,701 - GFF6832 0.71 +0.9 18,701 - GFF6832 0.71 -2.1 18,701 - GFF6832 0.71 -2.2 18,701 - GFF6832 0.71 +0.2 18,701 - GFF6832 0.71 -1.5 18,701 - GFF6832 0.71 +0.3 18,701 - GFF6832 0.71 -0.6 18,868 + GFF6832 0.88 -2.6 18,868 + GFF6832 0.88 -1.7 18,868 + GFF6832 0.88 -0.9 18,868 + GFF6832 0.88 +0.4 18,869 - GFF6832 0.88 +1.3 18,881 - GFF6832 0.89 -0.4 18,925 + -1.5 18,926 - -0.7
Or see this region's nucleotide sequence