Strain Fitness in Variovorax sp. SCN45 around GFF6576

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
16,058	+		GFF6574	0.84	-0.2
16,058	+		GFF6574	0.84	-0.2
16,058	+		GFF6574	0.84	+0.3
16,059	-		GFF6574	0.84	+0.5
16,059	-		GFF6574	0.84	-0.4
16,059	-		GFF6574	0.84	-1.1
16,146	+				-0.4
16,147	-				+0.6
16,147	-				+0.2
16,147	-				+0.7
16,147	-				+0.2
16,147	-				-0.3
16,147	-				+0.6
16,217	+				-0.5
16,218	-				-0.2
16,218	-				-1.1
16,290	-				+1.2
16,313	+				-1.0
16,313	+				-0.2
16,313	+				+0.9
16,314	-				+1.2
16,314	-				+0.1
16,314	-				-0.7
16,668	-		GFF6575	0.50	+1.1
16,668	-		GFF6575	0.50	-0.5
16,668	-		GFF6575	0.50	-0.3
16,679	+		GFF6575	0.52	+0.9
16,680	-		GFF6575	0.52	+0.8
16,718	+		GFF6575	0.57	+0.2
16,849	+		GFF6575	0.74	-1.4
16,849	+		GFF6575	0.74	+0.5
16,850	-		GFF6575	0.74	-1.8
16,850	-		GFF6575	0.74	+0.5
17,300	-		GFF6576	0.10	+0.3
17,300	-		GFF6576	0.10	-2.7
17,302	+		GFF6576	0.10	+0.3
17,302	+		GFF6576	0.10	+0.1
17,302	+		GFF6576	0.10	-0.8
17,302	+		GFF6576	0.10	+0.5
17,302	+		GFF6576	0.10	-0.5
17,302	+		GFF6576	0.10	+1.7
17,302	+		GFF6576	0.10	-1.0
17,302	+		GFF6576	0.10	+0.1
17,302	+		GFF6576	0.10	-0.7
17,302	+		GFF6576	0.10	-0.4
17,303	-		GFF6576	0.10	+1.5
17,303	-		GFF6576	0.10	-0.2
17,303	-		GFF6576	0.10	-1.2
17,303	-		GFF6576	0.10	+0.9
17,303	-		GFF6576	0.10	+0.7
17,303	-		GFF6576	0.10	-1.0
17,303	-		GFF6576	0.10	+0.6
17,303	-		GFF6576	0.10	-0.2
17,305	+		GFF6576	0.10	+0.6
17,305	+		GFF6576	0.10	+0.5
17,305	+		GFF6576	0.10	-0.1
17,306	-		GFF6576	0.11	-0.0
17,306	-		GFF6576	0.11	-0.5
17,306	-		GFF6576	0.11	-0.1
17,306	-		GFF6576	0.11	-0.8
17,371	+		GFF6576	0.13	-0.3
17,371	+		GFF6576	0.13	+1.8
17,371	+		GFF6576	0.13	+1.5
17,371	+		GFF6576	0.13	-0.0
17,372	-		GFF6576	0.13	+0.3
17,372	-		GFF6576	0.13	-0.8
17,645	-		GFF6576	0.24	-0.0
17,788	+		GFF6576	0.30	+1.1
17,788	+		GFF6576	0.30	+1.1
17,788	+		GFF6576	0.30	-0.4
17,788	+		GFF6576	0.30	-0.4
17,788	+		GFF6576	0.30	+0.3
17,788	+		GFF6576	0.30	+0.2
17,789	-		GFF6576	0.30	-1.3
17,789	-		GFF6576	0.30	+1.5
17,789	-		GFF6576	0.30	+0.6
17,789	-		GFF6576	0.30	+0.1
18,040	+		GFF6576	0.40	-0.1
18,040	+		GFF6576	0.40	-1.7
18,198	+		GFF6576	0.47	-2.4
18,198	+		GFF6576	0.47	+0.7
18,209	+		GFF6576	0.47	+0.5
18,371	-		GFF6576	0.54	+0.0
18,530	-		GFF6576	0.60	-0.1
18,873	+		GFF6576	0.74	+0.5
18,964	+		GFF6576	0.77	-2.0
18,965	-		GFF6576	0.78	-0.9
19,147	+		GFF6576	0.85	+0.6
19,148	-		GFF6576	0.85	-1.7
19,165	+		GFF6576	0.86	-2.0
19,165	+		GFF6576	0.86	-1.5
19,165	+		GFF6576	0.86	-1.4
19,165	+		GFF6576	0.86	-0.7
19,165	+		GFF6576	0.86	+0.0
19,166	-		GFF6576	0.86	+0.6
19,166	-		GFF6576	0.86	-0.4
19,166	-		GFF6576	0.86	-0.4
19,166	-		GFF6576	0.86	+0.2
19,166	-		GFF6576	0.86	+1.1
19,271	+		GFF6576	0.90	-2.0
19,535	-				+0.2
19,535	-				+0.1
19,806	-				-1.6
20,156	-				-0.5