Strain Fitness in Variovorax sp. SCN45 around GFF6522

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
16,397	-		GFF6521	0.64	-0.2
16,441	+		GFF6521	0.69	+0.0
16,441	+		GFF6521	0.69	+0.2
16,441	+		GFF6521	0.69	+0.7
16,441	+		GFF6521	0.69	-0.7
16,441	+		GFF6521	0.69	-1.0
16,441	+		GFF6521	0.69	-0.3
16,442	-		GFF6521	0.69	-0.8
16,442	-		GFF6521	0.69	-0.1
16,442	-		GFF6521	0.69	-1.0
16,442	-		GFF6521	0.69	-0.7
16,442	-		GFF6521	0.69	+0.2
16,442	-		GFF6521	0.69	+0.1
16,531	+		GFF6521	0.78	+0.1
16,531	+		GFF6521	0.78	-0.4
16,531	+		GFF6521	0.78	+0.9
16,532	-		GFF6521	0.79	-0.3
16,678	+				-1.8
16,678	+				+0.7
16,678	+				-0.1
16,679	-				+0.1
16,698	+				-0.9
16,698	+				+0.3
16,698	+				+0.0
16,699	-				-2.1
16,699	-				-0.8
16,699	-				-1.1
16,699	-				-1.7
16,840	-				-0.2
16,955	+				+0.7
16,988	+				-0.6
16,989	-				-2.1
17,024	+				-2.0
17,060	+				-1.3
17,060	+				+0.3
17,085	+				-0.5
17,085	+				+0.7
17,085	+				+0.0
17,085	+				-1.1
17,085	+				-0.1
17,085	+				-0.9
17,085	+				-0.4
17,085	+				+0.4
17,086	-				-1.4
17,086	-				-0.1
17,086	-				-0.4
17,086	-				+0.1
17,087	+				-0.5
17,087	+				+0.5
17,088	-				-0.4
17,088	-				+0.8
17,142	-		GFF6522	0.12	-0.9
17,142	-		GFF6522	0.12	-0.6
17,181	-		GFF6522	0.14	-1.2
17,381	+		GFF6522	0.23	-1.1
17,381	+		GFF6522	0.23	+0.5
17,387	+		GFF6522	0.23	-3.1
17,388	-		GFF6522	0.23	-0.5
17,388	-		GFF6522	0.23	-0.3
17,471	+		GFF6522	0.27	+2.2
17,471	+		GFF6522	0.27	+0.4
17,471	+		GFF6522	0.27	+0.3
17,471	+		GFF6522	0.27	+1.6
17,471	+		GFF6522	0.27	-1.0
17,472	-		GFF6522	0.27	-0.7
17,472	-		GFF6522	0.27	-0.4
17,472	-		GFF6522	0.27	-1.5
17,472	-		GFF6522	0.27	+0.1
17,472	-		GFF6522	0.27	-0.1
17,492	+		GFF6522	0.28	+0.4
17,492	+		GFF6522	0.28	-0.2
17,492	+		GFF6522	0.28	-0.8
17,492	+		GFF6522	0.28	-0.8
17,492	+		GFF6522	0.28	+0.7
17,493	-		GFF6522	0.28	+0.3
17,493	-		GFF6522	0.28	-0.7
17,493	-		GFF6522	0.28	-0.1
17,493	-		GFF6522	0.28	-1.1
17,493	-		GFF6522	0.28	-1.2
17,493	-		GFF6522	0.28	-0.2
17,633	+		GFF6522	0.35	-0.0
17,633	+		GFF6522	0.35	-0.1
17,634	-		GFF6522	0.35	+0.5
17,634	-		GFF6522	0.35	-1.5
17,634	-		GFF6522	0.35	-0.3
17,657	+		GFF6522	0.36	-0.7
17,658	-		GFF6522	0.36	-0.5
17,849	+		GFF6522	0.45	+0.7
17,849	+		GFF6522	0.45	+0.2
18,186	-		GFF6522	0.62	-0.5
18,186	-		GFF6522	0.62	-1.0
18,186	-		GFF6522	0.62	+0.7
18,186	-		GFF6522	0.62	+0.5
18,186	-		GFF6522	0.62	-0.4
18,186	-		GFF6522	0.62	+0.4
18,197	+		GFF6522	0.62	+2.2
18,197	+		GFF6522	0.62	+0.4
18,198	-		GFF6522	0.62	+0.8
18,198	-		GFF6522	0.62	-0.5
18,198	-		GFF6522	0.62	+0.2
18,238	+		GFF6522	0.64	-0.4
18,239	-		GFF6522	0.64	+0.8
18,450	-		GFF6522	0.74	+0.2
18,545	+		GFF6522	0.79	-0.4
18,546	-		GFF6522	0.79	+1.5
18,620	+		GFF6522	0.82	+0.4
18,620	+		GFF6522	0.82	+0.4
18,620	+		GFF6522	0.82	-1.8
18,621	-		GFF6522	0.82	-0.3
18,725	+		GFF6522	0.87	+0.7
18,726	-		GFF6522	0.87	+1.0
18,726	-		GFF6522	0.87	+0.3
19,142	+		GFF6523	0.18	-1.2
19,142	+		GFF6523	0.18	-0.5
19,226	+		GFF6523	0.39	-1.5
19,227	-		GFF6523	0.39	-0.8
19,509	+				+0.6
19,509	+				+0.3
19,510	-				-0.0
19,510	-				-1.3
19,510	-				+0.0
19,575	+				-1.8
19,575	+				+1.5
19,575	+				-0.7
19,575	+				-1.3
19,575	+				-0.8
19,576	-				+0.3
19,576	-				-0.8
19,576	-				+0.8
19,576	-				+0.3
19,576	-				-2.4
19,576	-				-0.6
19,576	-				+1.5
19,653	+				-0.3
19,675	-				+0.1
19,675	-				+0.7
19,800	+		GFF6524	0.15	-0.3
19,800	+		GFF6524	0.15	-0.0
19,800	+		GFF6524	0.15	-0.8
19,800	+		GFF6524	0.15	+0.5
19,800	+		GFF6524	0.15	-0.2
19,801	-		GFF6524	0.15	+0.9
19,821	+		GFF6524	0.15	-0.0
19,822	-		GFF6524	0.16	+0.0
19,822	-		GFF6524	0.16	+0.9
19,827	+		GFF6524	0.16	+0.2
19,827	+		GFF6524	0.16	-0.5
19,827	+		GFF6524	0.16	+0.1
19,827	+		GFF6524	0.16	+0.5
19,828	-		GFF6524	0.16	-0.8
19,828	-		GFF6524	0.16	-0.9
19,828	-		GFF6524	0.16	-0.2
19,828	-		GFF6524	0.16	-0.1
19,828	-		GFF6524	0.16	-1.4
19,828	-		GFF6524	0.16	-0.9
19,842	+		GFF6524	0.16	-1.1
19,843	-		GFF6524	0.17	+0.2
19,843	-		GFF6524	0.17	-1.0
19,843	-		GFF6524	0.17	+1.5
19,843	-		GFF6524	0.17	-1.4
19,843	-		GFF6524	0.17	-0.8
19,945	+		GFF6524	0.21	-0.3
19,947	+		GFF6524	0.21	+1.2
19,947	+		GFF6524	0.21	-0.7
19,947	+		GFF6524	0.21	-1.5
19,947	+		GFF6524	0.21	-0.2
19,948	-		GFF6524	0.21	-0.6
19,989	+		GFF6524	0.23	+0.4
19,990	-		GFF6524	0.23	-0.7
19,990	-		GFF6524	0.23	+0.5
19,990	-		GFF6524	0.23	+0.3
19,990	-		GFF6524	0.23	-0.1