Strain Fitness in Variovorax sp. SCN45 around GFF651

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF649 and GFF650 overlap by 8 nucleotidesGFF650 and GFF651 overlap by 8 nucleotidesGFF651 and GFF652 are separated by 91 nucleotidesGFF652 and GFF653 overlap by 4 nucleotides GFF649 - no description, at 698,909 to 701,443 GFF649 GFF650 - Response regulator, at 701,436 to 701,894 GFF650 GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175 GFF651 GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905 GFF652 GFF653 - no description, at 704,902 to 705,318 GFF653 Position (kb) 701 702 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 701.103 kb on + strand, within GFF649at 701.103 kb on + strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.241 kb on + strandat 701.241 kb on + strandat 701.438 kb on - strandat 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.768 kb on - strand, within GFF650at 701.888 kb on + strandat 701.888 kb on + strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.120 kb on - strand, within GFF651at 702.120 kb on - strand, within GFF651at 702.488 kb on + strand, within GFF651at 702.489 kb on - strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.546 kb on - strand, within GFF651at 702.546 kb on - strand, within GFF651at 702.593 kb on + strand, within GFF651at 702.594 kb on - strand, within GFF651at 702.594 kb on - strand, within GFF651at 702.594 kb on - strand, within GFF651at 702.977 kb on + strand, within GFF651at 702.977 kb on + strand, within GFF651at 702.977 kb on + strand, within GFF651at 702.977 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.397 kb on + strand, within GFF651at 703.398 kb on - strand, within GFF651at 703.398 kb on - strand, within GFF651at 703.538 kb on + strand, within GFF651at 703.592 kb on + strand, within GFF651at 703.592 kb on + strand, within GFF651at 703.593 kb on - strand, within GFF651at 703.593 kb on - strand, within GFF651at 703.593 kb on - strand, within GFF651at 703.593 kb on - strand, within GFF651at 703.601 kb on + strand, within GFF651at 703.601 kb on + strand, within GFF651at 703.601 kb on + strand, within GFF651at 703.659 kb on - strand, within GFF651at 703.775 kb on + strand, within GFF651at 703.775 kb on + strand, within GFF651at 703.775 kb on + strand, within GFF651at 703.775 kb on + strand, within GFF651at 703.775 kb on + strand, within GFF651at 704.216 kb on - strandat 704.216 kb on - strandat 704.216 kb on - strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.268 kb on + strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.269 kb on - strandat 704.440 kb on - strand, within GFF652at 704.521 kb on - strand, within GFF652at 704.521 kb on - strand, within GFF652at 704.521 kb on - strand, within GFF652at 704.521 kb on - strand, within GFF652at 704.521 kb on - strand, within GFF652at 704.645 kb on + strand, within GFF652at 704.646 kb on - strand, within GFF652at 704.778 kb on + strand, within GFF652at 704.779 kb on - strand, within GFF652at 704.779 kb on - strand, within GFF652at 704.779 kb on - strand, within GFF652at 705.059 kb on + strand, within GFF653at 705.059 kb on + strand, within GFF653at 705.059 kb on + strand, within GFF653at 705.059 kb on + strand, within GFF653at 705.059 kb on + strand, within GFF653at 705.060 kb on - strand, within GFF653at 705.060 kb on - strand, within GFF653at 705.060 kb on - strand, within GFF653at 705.060 kb on - strand, within GFF653

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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701,103 + GFF649 0.87 -0.8
701,103 + GFF649 0.87 -0.3
701,104 - GFF649 0.87 -0.3
701,104 - GFF649 0.87 -0.7
701,104 - GFF649 0.87 -0.2
701,241 + -1.1
701,241 + +0.0
701,438 - -1.6
701,557 + GFF650 0.26 -0.0
701,557 + GFF650 0.26 -0.3
701,557 + GFF650 0.26 +0.0
701,557 + GFF650 0.26 +1.3
701,557 + GFF650 0.26 +0.6
701,557 + GFF650 0.26 -1.5
701,557 + GFF650 0.26 +0.6
701,558 - GFF650 0.27 -0.5
701,558 - GFF650 0.27 -0.5
701,558 - GFF650 0.27 +0.2
701,558 - GFF650 0.27 -0.4
701,558 - GFF650 0.27 -0.6
701,579 - GFF650 0.31 +1.3
701,579 - GFF650 0.31 -0.8
701,579 - GFF650 0.31 -0.5
701,767 + GFF650 0.72 +0.2
701,767 + GFF650 0.72 -0.0
701,767 + GFF650 0.72 -1.2
701,768 - GFF650 0.72 -0.6
701,888 + +0.6
701,888 + -0.8
701,889 - +0.6
701,889 - -0.8
701,889 - +0.3
701,889 - +0.9
701,889 - -1.0
702,119 + GFF651 0.10 -1.1
702,119 + GFF651 0.10 +0.6
702,119 + GFF651 0.10 -0.2
702,119 + GFF651 0.10 -0.6
702,119 + GFF651 0.10 +0.8
702,119 + GFF651 0.10 -1.5
702,120 - GFF651 0.10 -0.4
702,120 - GFF651 0.10 -0.1
702,488 + GFF651 0.26 -0.0
702,489 - GFF651 0.26 -0.8
702,545 + GFF651 0.29 +1.2
702,545 + GFF651 0.29 +0.3
702,545 + GFF651 0.29 +0.2
702,546 - GFF651 0.29 +0.2
702,546 - GFF651 0.29 +0.1
702,593 + GFF651 0.31 +0.6
702,594 - GFF651 0.31 -1.0
702,594 - GFF651 0.31 -0.4
702,594 - GFF651 0.31 -1.0
702,977 + GFF651 0.48 -0.6
702,977 + GFF651 0.48 +0.3
702,977 + GFF651 0.48 +3.1
702,977 + GFF651 0.48 -0.9
703,397 + GFF651 0.66 -0.5
703,397 + GFF651 0.66 -0.5
703,397 + GFF651 0.66 -0.2
703,397 + GFF651 0.66 -0.4
703,397 + GFF651 0.66 +0.2
703,397 + GFF651 0.66 -1.2
703,398 - GFF651 0.66 +1.3
703,398 - GFF651 0.66 -0.1
703,538 + GFF651 0.72 -1.2
703,592 + GFF651 0.74 +1.9
703,592 + GFF651 0.74 -2.1
703,593 - GFF651 0.75 -0.0
703,593 - GFF651 0.75 -1.3
703,593 - GFF651 0.75 -0.8
703,593 - GFF651 0.75 -0.7
703,601 + GFF651 0.75 +0.3
703,601 + GFF651 0.75 -0.1
703,601 + GFF651 0.75 -0.0
703,659 - GFF651 0.77 +1.1
703,775 + GFF651 0.82 -0.0
703,775 + GFF651 0.82 +1.2
703,775 + GFF651 0.82 +0.6
703,775 + GFF651 0.82 +0.2
703,775 + GFF651 0.82 -0.8
704,216 - -0.2
704,216 - -0.8
704,216 - +1.0
704,268 + +0.8
704,268 + +1.0
704,268 + +0.1
704,268 + +0.5
704,269 - -0.4
704,269 - +0.1
704,269 - -0.1
704,269 - -2.1
704,440 - GFF652 0.27 -1.0
704,521 - GFF652 0.40 +0.0
704,521 - GFF652 0.40 +1.5
704,521 - GFF652 0.40 -1.0
704,521 - GFF652 0.40 +0.3
704,521 - GFF652 0.40 +0.9
704,645 + GFF652 0.59 -0.3
704,646 - GFF652 0.59 -0.5
704,778 + GFF652 0.80 +0.5
704,779 - GFF652 0.80 +0.0
704,779 - GFF652 0.80 +0.7
704,779 - GFF652 0.80 -0.0
705,059 + GFF653 0.38 -1.2
705,059 + GFF653 0.38 +1.1
705,059 + GFF653 0.38 -1.1
705,059 + GFF653 0.38 -0.2
705,059 + GFF653 0.38 +0.2
705,060 - GFF653 0.38 -0.7
705,060 - GFF653 0.38 -1.0
705,060 - GFF653 0.38 -0.8
705,060 - GFF653 0.38 +0.3

Or see this region's nucleotide sequence