Strain Fitness in Variovorax sp. SCN45 around GFF6225

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
6,133	+		GFF6224	0.35	+0.0
6,133	+		GFF6224	0.35	-0.9
6,133	+		GFF6224	0.35	+1.8
6,133	+		GFF6224	0.35	+0.8
6,134	-		GFF6224	0.36	-2.3
6,134	-		GFF6224	0.36	+0.1
6,134	-		GFF6224	0.36	-0.2
6,644	-		GFF6224	0.74	-0.6
6,644	-		GFF6224	0.74	+0.2
6,872	-				-0.8
6,872	-				+0.7
7,072	-				-0.3
7,079	-				+1.2
7,112	+				-0.7
7,112	+				-0.8
7,113	-				-1.0
7,163	+				-1.8
7,163	+				+0.6
7,163	+				-1.8
7,163	+				-0.8
7,164	-				-1.3
7,164	-				-1.0
7,165	+				+0.3
7,250	+		GFF6225	0.12	-0.4
7,250	+		GFF6225	0.12	+0.1
7,298	+		GFF6225	0.16	-1.4
7,305	-		GFF6225	0.17	+0.1
7,916	+		GFF6225	0.74	-0.1
7,916	+		GFF6225	0.74	-2.1
7,916	+		GFF6225	0.74	-0.9
7,916	+		GFF6225	0.74	+1.3
7,917	-		GFF6225	0.75	+0.2
7,917	-		GFF6225	0.75	-0.1
7,917	-		GFF6225	0.75	-0.6
7,931	+		GFF6225	0.76	-0.7
7,931	+		GFF6225	0.76	-1.2
7,932	-		GFF6225	0.76	-0.1
7,932	-		GFF6225	0.76	-0.4
8,434	+		GFF6226	0.25	+0.2
8,434	+		GFF6226	0.25	-0.2
8,434	+		GFF6226	0.25	-0.6
8,435	-		GFF6226	0.25	+2.9
8,435	-		GFF6226	0.25	-1.0
8,435	-		GFF6226	0.25	+0.2
8,435	-		GFF6226	0.25	-0.9
8,435	-		GFF6226	0.25	-1.1
8,435	-		GFF6226	0.25	-1.6
8,435	-		GFF6226	0.25	+1.3
8,435	-		GFF6226	0.25	-0.8
8,980	+		GFF6226	0.81	+2.0
8,981	-		GFF6226	0.81	+0.5