Strain Fitness in Variovorax sp. SCN45 around GFF6201

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
106,787	+		GFF6200	0.38	-1.1
106,788	-		GFF6200	0.38	+0.7
106,811	+		GFF6200	0.39	+0.3
106,811	+		GFF6200	0.39	-0.0
106,811	+		GFF6200	0.39	-0.5
106,811	+		GFF6200	0.39	-1.5
106,812	-		GFF6200	0.39	-0.5
106,814	+		GFF6200	0.39	+0.3
106,814	+		GFF6200	0.39	-1.1
106,814	+		GFF6200	0.39	-0.3
106,814	+		GFF6200	0.39	+0.4
106,815	-		GFF6200	0.39	-0.2
106,815	-		GFF6200	0.39	-2.4
106,815	-		GFF6200	0.39	-0.1
106,815	-		GFF6200	0.39	-0.4
107,423	+		GFF6200	0.81	-0.3
107,423	+		GFF6200	0.81	-0.4
107,423	+		GFF6200	0.81	-0.8
107,423	+		GFF6200	0.81	+0.3
107,724	+				-1.3
107,866	-		GFF6201	0.12	+1.6
107,892	+		GFF6201	0.15	+0.4
107,892	+		GFF6201	0.15	-0.3
107,892	+		GFF6201	0.15	+1.1
107,892	+		GFF6201	0.15	+0.8
107,893	-		GFF6201	0.15	-0.4
107,893	-		GFF6201	0.15	-2.3
107,959	+		GFF6201	0.23	+0.6
107,960	-		GFF6201	0.23	-1.9
108,079	-		GFF6201	0.38	+0.6
108,252	+		GFF6201	0.59	-0.0
108,252	+		GFF6201	0.59	+0.2
108,252	+		GFF6201	0.59	+1.3
108,252	+		GFF6201	0.59	+1.6
108,253	-		GFF6201	0.59	+0.4
108,253	-		GFF6201	0.59	-0.2
108,253	-		GFF6201	0.59	-0.2
109,056	-		GFF6202	0.30	-1.0
109,305	-		GFF6202	0.47	-0.0
109,305	-		GFF6202	0.47	-1.3
109,458	-		GFF6202	0.57	-0.1
109,458	-		GFF6202	0.57	-0.6
109,458	-		GFF6202	0.57	-0.2
109,553	+		GFF6202	0.64	-0.0
109,554	-		GFF6202	0.64	-0.7