Strain Fitness in Variovorax sp. SCN45 around GFF6148

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
52,108	+		GFF6147	0.41	-0.2
52,108	+		GFF6147	0.41	-0.0
52,109	-		GFF6147	0.41	-0.1
52,607	-		GFF6147	0.76	-0.8
52,607	-		GFF6147	0.76	-0.3
52,761	+		GFF6147	0.86	-0.1
53,023	+		GFF6148	0.10	+0.2
53,476	+				+0.0
53,476	+				-0.3
53,476	+				+2.3
53,477	-				-0.3
53,477	-				-0.0
53,480	-				-1.4
53,492	+				-0.5
53,695	+				-0.0
53,695	+				-1.7
54,025	-		GFF6149	0.33	-1.6
54,091	-		GFF6149	0.37	-1.3
54,091	-		GFF6149	0.37	-0.5
54,244	+		GFF6149	0.48	-0.4
54,245	-		GFF6149	0.49	+0.6
54,424	-		GFF6149	0.61	+1.1
54,426	+		GFF6149	0.62	+1.4
54,426	+		GFF6149	0.62	+0.1
54,426	+		GFF6149	0.62	-2.7
54,426	+		GFF6149	0.62	+1.1
54,427	-		GFF6149	0.62	+0.3
54,427	-		GFF6149	0.62	-0.0
54,427	-		GFF6149	0.62	+0.3
54,430	-		GFF6149	0.62	-0.5
54,528	+		GFF6149	0.69	-0.2
54,528	+		GFF6149	0.69	-0.5
54,529	-		GFF6149	0.69	-0.2