Strain Fitness in Variovorax sp. SCN45 around GFF608

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF607 and GFF608 are separated by 229 nucleotidesGFF608 and GFF609 overlap by 1 nucleotides GFF607 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 652,462 to 653,445 GFF607 GFF608 - VgrG protein, at 653,675 to 656,194 GFF608 GFF609 - hypothetical protein, at 656,194 to 658,056 GFF609 Position (kb) 653 654 655 656 657Strain fitness (log2 ratio) -2 -1 0 1 2at 652.732 kb on + strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.733 kb on - strand, within GFF607at 652.797 kb on - strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.056 kb on + strand, within GFF607at 653.057 kb on - strand, within GFF607at 653.260 kb on + strand, within GFF607at 653.582 kb on + strandat 653.582 kb on + strandat 653.583 kb on - strandat 653.608 kb on + strandat 653.770 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.900 kb on + strandat 653.901 kb on - strandat 654.044 kb on + strand, within GFF608at 654.044 kb on + strand, within GFF608at 654.045 kb on - strand, within GFF608at 654.045 kb on - strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.059 kb on + strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.060 kb on - strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.125 kb on + strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.126 kb on - strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.128 kb on + strand, within GFF608at 654.129 kb on - strand, within GFF608at 654.129 kb on - strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.131 kb on + strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.132 kb on - strand, within GFF608at 654.224 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.281 kb on + strand, within GFF608at 654.282 kb on - strand, within GFF608at 654.335 kb on + strand, within GFF608at 654.335 kb on + strand, within GFF608at 654.336 kb on - strand, within GFF608at 654.434 kb on + strand, within GFF608at 654.434 kb on + strand, within GFF608at 654.461 kb on + strand, within GFF608at 654.461 kb on + strand, within GFF608at 654.462 kb on - strand, within GFF608at 654.462 kb on - strand, within GFF608at 654.593 kb on + strand, within GFF608at 654.593 kb on + strand, within GFF608at 654.593 kb on + strand, within GFF608at 654.594 kb on - strand, within GFF608at 654.594 kb on - strand, within GFF608at 654.594 kb on - strand, within GFF608at 654.615 kb on - strand, within GFF608at 654.939 kb on + strand, within GFF608at 654.939 kb on + strand, within GFF608at 654.940 kb on - strand, within GFF608at 654.940 kb on - strand, within GFF608at 655.706 kb on + strand, within GFF608at 655.706 kb on + strand, within GFF608at 655.707 kb on - strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.865 kb on + strand, within GFF608at 655.866 kb on - strand, within GFF608at 656.163 kb on - strandat 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.524 kb on + strand, within GFF609at 656.525 kb on - strand, within GFF609at 656.525 kb on - strand, within GFF609at 656.768 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.834 kb on - strand, within GFF609at 656.990 kb on - strand, within GFF609at 657.061 kb on + strand, within GFF609at 657.062 kb on - strand, within GFF609at 657.062 kb on - strand, within GFF609at 657.151 kb on + strand, within GFF609at 657.152 kb on - strand, within GFF609

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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652,732 + GFF607 0.27 -1.2
652,733 - GFF607 0.28 -0.8
652,733 - GFF607 0.28 -1.0
652,733 - GFF607 0.28 -1.1
652,733 - GFF607 0.28 -0.2
652,797 - GFF607 0.34 -0.4
653,056 + GFF607 0.60 -0.7
653,056 + GFF607 0.60 +0.9
653,056 + GFF607 0.60 -0.2
653,057 - GFF607 0.60 +0.8
653,260 + GFF607 0.81 -2.5
653,582 + +0.6
653,582 + +0.2
653,583 - -1.8
653,608 + +0.3
653,770 + +0.3
653,900 + -0.5
653,900 + -0.0
653,900 + +0.5
653,900 + -0.4
653,901 - -0.0
654,044 + GFF608 0.15 +1.1
654,044 + GFF608 0.15 +1.2
654,045 - GFF608 0.15 +1.3
654,045 - GFF608 0.15 -0.2
654,059 + GFF608 0.15 +0.2
654,059 + GFF608 0.15 -0.6
654,059 + GFF608 0.15 -0.4
654,060 - GFF608 0.15 -1.0
654,060 - GFF608 0.15 +1.7
654,060 - GFF608 0.15 -0.6
654,125 + GFF608 0.18 -0.1
654,125 + GFF608 0.18 +0.0
654,125 + GFF608 0.18 +0.4
654,125 + GFF608 0.18 +0.6
654,125 + GFF608 0.18 -1.1
654,126 - GFF608 0.18 -0.7
654,126 - GFF608 0.18 +0.2
654,126 - GFF608 0.18 -0.2
654,126 - GFF608 0.18 +0.4
654,126 - GFF608 0.18 -0.4
654,126 - GFF608 0.18 +0.2
654,128 + GFF608 0.18 +0.9
654,128 + GFF608 0.18 -0.4
654,128 + GFF608 0.18 -1.7
654,129 - GFF608 0.18 +0.6
654,129 - GFF608 0.18 -0.5
654,131 + GFF608 0.18 -0.5
654,131 + GFF608 0.18 -1.7
654,131 + GFF608 0.18 +1.0
654,132 - GFF608 0.18 -0.4
654,132 - GFF608 0.18 +1.2
654,132 - GFF608 0.18 +0.5
654,132 - GFF608 0.18 +0.2
654,132 - GFF608 0.18 -0.4
654,224 + GFF608 0.22 -0.9
654,281 + GFF608 0.24 -0.7
654,281 + GFF608 0.24 +0.2
654,281 + GFF608 0.24 +0.3
654,281 + GFF608 0.24 -1.1
654,281 + GFF608 0.24 -0.0
654,281 + GFF608 0.24 -0.5
654,281 + GFF608 0.24 -0.6
654,282 - GFF608 0.24 +1.8
654,335 + GFF608 0.26 -0.3
654,335 + GFF608 0.26 +0.5
654,336 - GFF608 0.26 -0.3
654,434 + GFF608 0.30 -0.1
654,434 + GFF608 0.30 -0.4
654,461 + GFF608 0.31 +0.5
654,461 + GFF608 0.31 +0.1
654,462 - GFF608 0.31 -0.2
654,462 - GFF608 0.31 +0.0
654,593 + GFF608 0.36 -0.7
654,593 + GFF608 0.36 -1.6
654,593 + GFF608 0.36 -1.7
654,594 - GFF608 0.36 -1.5
654,594 - GFF608 0.36 -0.2
654,594 - GFF608 0.36 -1.0
654,615 - GFF608 0.37 +1.9
654,939 + GFF608 0.50 +0.3
654,939 + GFF608 0.50 -1.0
654,940 - GFF608 0.50 -0.1
654,940 - GFF608 0.50 +0.0
655,706 + GFF608 0.81 -0.1
655,706 + GFF608 0.81 -2.1
655,707 - GFF608 0.81 -0.3
655,865 + GFF608 0.87 +0.0
655,865 + GFF608 0.87 -0.3
655,865 + GFF608 0.87 +0.8
655,866 - GFF608 0.87 +0.3
656,163 - +0.2
656,524 + GFF609 0.18 -1.2
656,524 + GFF609 0.18 -0.2
656,524 + GFF609 0.18 -0.1
656,524 + GFF609 0.18 -0.6
656,524 + GFF609 0.18 +1.1
656,525 - GFF609 0.18 -1.7
656,525 - GFF609 0.18 -1.2
656,768 - GFF609 0.31 -0.0
656,834 - GFF609 0.34 +0.2
656,834 - GFF609 0.34 +2.1
656,834 - GFF609 0.34 +0.5
656,990 - GFF609 0.43 -1.3
657,061 + GFF609 0.47 +0.3
657,062 - GFF609 0.47 -1.2
657,062 - GFF609 0.47 -0.4
657,151 + GFF609 0.51 -0.1
657,152 - GFF609 0.51 -1.4

Or see this region's nucleotide sequence