Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5805 and GFF5806 overlap by 14 nucleotides GFF5806 and GFF5807 are separated by 157 nucleotides GFF5807 and GFF5808 are separated by 85 nucleotides
GFF5805 - Putative transmembrane protein, at 181,032 to 181,718
GFF5805
GFF5806 - RNA polymerase ECF-type sigma factor, at 181,705 to 182,280
GFF5806
GFF5807 - hypothetical protein, at 182,438 to 183,685
GFF5807
GFF5808 - Putative oxidoreductase, at 183,771 to 184,781
GFF5808
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.889 kb on + strand, within GFF5806 at 181.890 kb on - strand, within GFF5806 at 182.066 kb on + strand, within GFF5806 at 182.067 kb on - strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.150 kb on + strand, within GFF5806 at 182.151 kb on - strand, within GFF5806 at 182.151 kb on - strand, within GFF5806 at 182.320 kb on + strand at 182.352 kb on - strand at 182.352 kb on - strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.531 kb on + strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.532 kb on - strand at 182.906 kb on + strand, within GFF5807 at 182.907 kb on - strand, within GFF5807 at 183.039 kb on - strand, within GFF5807 at 183.352 kb on + strand, within GFF5807 at 183.352 kb on + strand, within GFF5807 at 183.352 kb on + strand, within GFF5807 at 183.352 kb on + strand, within GFF5807 at 183.352 kb on + strand, within GFF5807 at 183.353 kb on - strand, within GFF5807 at 183.353 kb on - strand, within GFF5807 at 183.623 kb on + strand at 183.623 kb on + strand at 183.630 kb on - strand at 183.650 kb on + strand at 183.650 kb on + strand at 183.651 kb on - strand at 183.651 kb on - strand at 183.674 kb on - strand at 183.710 kb on + strand at 183.710 kb on + strand at 183.710 kb on + strand at 183.710 kb on + strand at 183.710 kb on + strand at 183.711 kb on - strand at 183.782 kb on + strand at 183.933 kb on + strand, within GFF5808 at 184.156 kb on - strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.242 kb on + strand, within GFF5808 at 184.256 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.320 kb on + strand, within GFF5808 at 184.321 kb on - strand, within GFF5808 at 184.342 kb on - strand, within GFF5808 at 184.416 kb on + strand, within GFF5808 at 184.417 kb on - strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.452 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.515 kb on + strand, within GFF5808 at 184.516 kb on - strand, within GFF5808
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 181,889 + GFF5806 0.32 +0.2 181,890 - GFF5806 0.32 +0.0 182,066 + GFF5806 0.63 -0.1 182,067 - GFF5806 0.63 -0.7 182,150 + GFF5806 0.77 +1.0 182,150 + GFF5806 0.77 -0.7 182,150 + GFF5806 0.77 +0.4 182,151 - GFF5806 0.77 -1.5 182,151 - GFF5806 0.77 +0.3 182,320 + -0.2 182,352 - -1.2 182,352 - +0.2 182,531 + -0.4 182,531 + -0.2 182,531 + -0.5 182,531 + -2.2 182,532 - +0.4 182,532 - -1.1 182,532 - -0.4 182,532 - +0.0 182,532 - -0.4 182,532 - -0.4 182,532 - -0.1 182,906 + GFF5807 0.38 -0.1 182,907 - GFF5807 0.38 -0.3 183,039 - GFF5807 0.48 -0.5 183,352 + GFF5807 0.73 -1.2 183,352 + GFF5807 0.73 +0.1 183,352 + GFF5807 0.73 -0.9 183,352 + GFF5807 0.73 -0.1 183,352 + GFF5807 0.73 -0.5 183,353 - GFF5807 0.73 +1.3 183,353 - GFF5807 0.73 -0.4 183,623 + +0.0 183,623 + +0.6 183,630 - -0.6 183,650 + +1.2 183,650 + +0.1 183,651 - +2.0 183,651 - +0.4 183,674 - +0.0 183,710 + -0.7 183,710 + -0.2 183,710 + -0.7 183,710 + +0.1 183,710 + -1.4 183,711 - -0.2 183,782 + -0.1 183,933 + GFF5808 0.16 +0.1 184,156 - GFF5808 0.38 +0.1 184,242 + GFF5808 0.47 +0.4 184,242 + GFF5808 0.47 -0.8 184,256 + GFF5808 0.48 +0.9 184,320 + GFF5808 0.54 +1.5 184,320 + GFF5808 0.54 -1.5 184,321 - GFF5808 0.54 +2.4 184,342 - GFF5808 0.56 +0.2 184,416 + GFF5808 0.64 -1.2 184,417 - GFF5808 0.64 -0.4 184,452 + GFF5808 0.67 -2.1 184,452 + GFF5808 0.67 +0.5 184,452 + GFF5808 0.67 -0.6 184,515 + GFF5808 0.74 -0.4 184,515 + GFF5808 0.74 -1.2 184,515 + GFF5808 0.74 +0.2 184,515 + GFF5808 0.74 -0.1 184,516 - GFF5808 0.74 -0.2
Or see this region's nucleotide sequence