Strain Fitness in Variovorax sp. SCN45 around GFF5657

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
32,294	+		GFF5655	0.72	-1.9
32,294	+		GFF5655	0.72	-0.1
32,294	+		GFF5655	0.72	-1.7
32,295	-		GFF5655	0.72	+0.4
32,295	-		GFF5655	0.72	-0.7
32,347	-		GFF5655	0.77	-0.2
32,347	-		GFF5655	0.77	-0.5
32,347	-		GFF5655	0.77	-0.7
32,401	-		GFF5655	0.82	-0.7
32,401	-		GFF5655	0.82	+0.3
32,401	-		GFF5655	0.82	+0.9
32,401	-		GFF5655	0.82	-0.5
32,590	+				+0.4
32,590	+				-1.0
32,591	-				-0.2
32,591	-				+0.8
32,707	+		GFF5656	0.18	+0.0
32,707	+		GFF5656	0.18	+1.0
32,707	+		GFF5656	0.18	+0.5
32,707	+		GFF5656	0.18	-0.2
32,707	+		GFF5656	0.18	-0.5
32,707	+		GFF5656	0.18	+0.3
32,707	+		GFF5656	0.18	+1.2
32,707	+		GFF5656	0.18	+0.3
32,707	+		GFF5656	0.18	+0.1
32,708	-		GFF5656	0.19	-0.7
32,708	-		GFF5656	0.19	-0.9
32,708	-		GFF5656	0.19	+0.9
32,784	+		GFF5656	0.31	-0.7
32,893	+		GFF5656	0.48	-0.5
32,894	-		GFF5656	0.48	+0.6
32,894	-		GFF5656	0.48	+0.2
32,894	-		GFF5656	0.48	-0.3
32,894	-		GFF5656	0.48	+0.2
33,202	+				+1.4
33,202	+				-1.1
33,202	+				-0.4
33,202	+				-1.0
33,203	-				+1.1
33,205	+				-0.7
33,205	+				-1.6
33,205	+				-0.8
33,206	-				-0.2
33,206	-				+1.4
33,206	-				-1.4
33,340	+		GFF5657	0.12	-0.8
33,359	+		GFF5657	0.13	+0.2
33,359	+		GFF5657	0.13	-0.3
33,360	-		GFF5657	0.14	+0.4
33,360	-		GFF5657	0.14	-0.7
33,476	+		GFF5657	0.26	+0.4
33,476	+		GFF5657	0.26	-0.2
33,509	+		GFF5657	0.29	-0.9
33,509	+		GFF5657	0.29	+0.0
33,509	+		GFF5657	0.29	-0.7
33,509	+		GFF5657	0.29	-0.2
33,509	+		GFF5657	0.29	+0.2
33,509	+		GFF5657	0.29	-1.5
33,509	+		GFF5657	0.29	-1.1
33,509	+		GFF5657	0.29	-2.9
33,509	+		GFF5657	0.29	-0.2
33,509	+		GFF5657	0.29	-0.8
33,510	-		GFF5657	0.29	+0.2
33,510	-		GFF5657	0.29	-0.3
33,510	-		GFF5657	0.29	-0.8
33,510	-		GFF5657	0.29	-1.3
33,510	-		GFF5657	0.29	-0.3
33,510	-		GFF5657	0.29	-0.5
33,545	+		GFF5657	0.33	-1.5
33,546	-		GFF5657	0.33	+0.4
33,546	-		GFF5657	0.33	+0.3
33,546	-		GFF5657	0.33	-0.6
33,546	-		GFF5657	0.33	-0.4
33,602	+		GFF5657	0.39	-0.9
33,603	-		GFF5657	0.39	+2.6
33,713	+		GFF5657	0.50	-0.2
33,714	-		GFF5657	0.50	-0.1
33,714	-		GFF5657	0.50	-0.3
33,714	-		GFF5657	0.50	+0.2
33,714	-		GFF5657	0.50	-0.7
33,714	-		GFF5657	0.50	-0.3
33,714	-		GFF5657	0.50	-2.2
33,714	-		GFF5657	0.50	-1.4
33,824	+		GFF5657	0.62	-2.2
33,825	-		GFF5657	0.62	+0.4
33,825	-		GFF5657	0.62	+0.2
33,825	-		GFF5657	0.62	-0.4
33,992	+		GFF5657	0.79	-0.5
33,992	+		GFF5657	0.79	+0.8
33,992	+		GFF5657	0.79	-0.3
33,992	+		GFF5657	0.79	-0.9
34,126	+				-0.9
34,127	-				-0.3
34,171	+				-0.5
34,390	+				-0.2
34,390	+				-0.1
34,390	+				-0.0
34,390	+				+0.3
34,390	+				-1.9
34,390	+				-0.5
34,391	-				-0.1
34,391	-				-0.1
34,567	+				-0.2
34,568	-				-0.6
34,568	-				+0.0
34,568	-				+0.1
34,696	+		GFF5659	0.14	-0.0
34,697	-		GFF5659	0.14	+0.1
34,697	-		GFF5659	0.14	-0.2
34,697	-		GFF5659	0.14	+1.2
34,697	-		GFF5659	0.14	-0.1
34,720	+		GFF5659	0.15	-0.5
34,735	+		GFF5659	0.16	+0.2
34,735	+		GFF5659	0.16	-0.8
34,864	+		GFF5659	0.21	-1.4
34,864	+		GFF5659	0.21	+0.2
34,865	-		GFF5659	0.21	+0.4
34,865	-		GFF5659	0.21	+2.2
34,865	-		GFF5659	0.21	+0.5
34,865	-		GFF5659	0.21	-0.5
35,090	-		GFF5659	0.30	-0.6
35,090	-		GFF5659	0.30	-0.9