Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF541 and GFF542 are separated by 28 nucleotides GFF542 and GFF543 are separated by 279 nucleotides GFF543 and GFF544 overlap by 13 nucleotides
GFF541 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 580,377 to 581,102
GFF541
GFF542 - no description, at 581,131 to 581,757
GFF542
GFF543 - Uncharacterized deacetylase PA5390, at 582,037 to 583,191
GFF543
GFF544 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 583,179 to 585,959
GFF544
Position (kb) 582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.101 kb on - strand at 581.101 kb on - strand at 581.101 kb on - strand at 581.293 kb on + strand, within GFF542 at 581.294 kb on - strand, within GFF542 at 581.395 kb on + strand, within GFF542 at 581.395 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.698 kb on + strand at 581.699 kb on - strand at 581.755 kb on + strand at 581.783 kb on + strand at 581.783 kb on + strand at 581.784 kb on - strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.921 kb on - strand at 581.921 kb on - strand at 581.921 kb on - strand at 581.945 kb on + strand at 581.984 kb on - strand at 582.127 kb on + strand at 582.128 kb on - strand at 582.128 kb on - strand at 582.128 kb on - strand at 582.427 kb on + strand, within GFF543 at 582.428 kb on - strand, within GFF543 at 582.643 kb on + strand, within GFF543 at 582.644 kb on - strand, within GFF543 at 582.644 kb on - strand, within GFF543 at 582.644 kb on - strand, within GFF543 at 582.806 kb on - strand, within GFF543 at 583.004 kb on + strand, within GFF543 at 583.004 kb on + strand, within GFF543 at 583.004 kb on + strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.005 kb on - strand, within GFF543 at 583.207 kb on + strand at 583.207 kb on + strand at 583.207 kb on + strand at 583.207 kb on + strand at 583.207 kb on + strand at 583.207 kb on + strand at 583.207 kb on + strand at 583.208 kb on - strand at 583.208 kb on - strand at 583.208 kb on - strand at 583.212 kb on + strand at 583.290 kb on + strand at 583.291 kb on - strand at 583.404 kb on + strand at 583.555 kb on - strand, within GFF544 at 583.773 kb on + strand, within GFF544 at 583.774 kb on - strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.800 kb on + strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.801 kb on - strand, within GFF544 at 583.954 kb on - strand, within GFF544 at 583.954 kb on - strand, within GFF544 at 583.954 kb on - strand, within GFF544 at 583.954 kb on - strand, within GFF544 at 583.954 kb on - strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.962 kb on + strand, within GFF544 at 583.963 kb on - strand, within GFF544 at 583.963 kb on - strand, within GFF544 at 583.963 kb on - strand, within GFF544
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL remove 581,100 + +0.0 581,100 + -0.7 581,100 + +0.7 581,100 + -0.1 581,100 + -0.2 581,100 + -0.9 581,100 + +0.9 581,101 - -0.3 581,101 - -1.6 581,101 - +0.2 581,293 + GFF542 0.26 +0.9 581,294 - GFF542 0.26 +1.9 581,395 + GFF542 0.42 -1.0 581,395 + GFF542 0.42 -1.0 581,514 + GFF542 0.61 +0.1 581,514 + GFF542 0.61 -1.2 581,514 + GFF542 0.61 -0.3 581,514 + GFF542 0.61 -0.0 581,514 + GFF542 0.61 -0.2 581,514 + GFF542 0.61 -0.8 581,515 - GFF542 0.61 -0.7 581,515 - GFF542 0.61 -1.7 581,515 - GFF542 0.61 +0.6 581,515 - GFF542 0.61 -0.2 581,515 - GFF542 0.61 -1.7 581,515 - GFF542 0.61 -0.6 581,698 + +0.8 581,699 - -0.2 581,755 + -0.2 581,783 + +1.3 581,783 + -0.1 581,784 - +0.6 581,912 + +0.7 581,912 + +0.3 581,912 + -1.6 581,912 + +1.3 581,912 + +0.3 581,912 + -1.1 581,913 - -2.4 581,913 - +0.6 581,913 - -0.2 581,913 - -0.1 581,913 - -1.1 581,913 - -1.0 581,913 - -0.4 581,918 + +0.3 581,918 + -0.4 581,918 + +0.8 581,918 + -1.3 581,918 + -0.4 581,918 + -2.2 581,918 + +0.8 581,918 + +0.3 581,918 + -0.7 581,918 + +2.1 581,918 + -0.4 581,918 + -1.0 581,918 + -0.8 581,918 + -1.0 581,918 + -2.2 581,918 + -0.5 581,919 - +0.0 581,919 - +0.7 581,919 - +0.3 581,919 - -1.5 581,919 - -0.2 581,919 - -1.0 581,919 - -0.1 581,919 - -0.5 581,919 - +0.2 581,919 - -2.0 581,919 - -0.2 581,919 - -1.5 581,919 - +2.3 581,919 - -0.6 581,919 - -1.0 581,919 - +0.0 581,919 - -0.5 581,919 - +1.3 581,919 - -0.5 581,919 - -0.3 581,919 - +0.3 581,919 - -1.5 581,919 - -0.0 581,920 + +0.3 581,920 + +0.0 581,920 + +1.1 581,920 + -0.9 581,920 + +0.2 581,920 + +1.2 581,920 + -0.5 581,920 + +0.6 581,920 + +0.2 581,920 + -1.7 581,921 - -0.2 581,921 - -0.4 581,921 - -0.9 581,945 + +0.9 581,984 - +0.8 582,127 + -1.0 582,128 - -1.0 582,128 - -0.8 582,128 - +0.8 582,427 + GFF543 0.34 +0.1 582,428 - GFF543 0.34 +0.3 582,643 + GFF543 0.52 +0.8 582,644 - GFF543 0.53 -0.2 582,644 - GFF543 0.53 +0.1 582,644 - GFF543 0.53 -0.2 582,806 - GFF543 0.67 +0.6 583,004 + GFF543 0.84 +1.0 583,004 + GFF543 0.84 -0.7 583,004 + GFF543 0.84 -0.5 583,005 - GFF543 0.84 +0.5 583,005 - GFF543 0.84 -0.2 583,005 - GFF543 0.84 +0.3 583,005 - GFF543 0.84 +0.9 583,005 - GFF543 0.84 +1.3 583,005 - GFF543 0.84 +0.3 583,005 - GFF543 0.84 +1.9 583,005 - GFF543 0.84 -0.4 583,207 + -1.6 583,207 + +0.3 583,207 + -0.1 583,207 + -1.2 583,207 + +0.1 583,207 + +2.3 583,207 + -0.8 583,208 - +0.1 583,208 - +0.5 583,208 - -2.1 583,212 + +0.9 583,290 + -0.3 583,291 - +0.0 583,404 + +0.9 583,555 - GFF544 0.14 +0.2 583,773 + GFF544 0.21 +0.1 583,774 - GFF544 0.21 +0.1 583,800 + GFF544 0.22 -0.1 583,800 + GFF544 0.22 +0.2 583,800 + GFF544 0.22 +1.5 583,800 + GFF544 0.22 +0.4 583,800 + GFF544 0.22 -0.5 583,800 + GFF544 0.22 +0.4 583,800 + GFF544 0.22 -0.1 583,800 + GFF544 0.22 -0.3 583,801 - GFF544 0.22 -0.7 583,801 - GFF544 0.22 -2.0 583,801 - GFF544 0.22 +0.0 583,801 - GFF544 0.22 +0.2 583,801 - GFF544 0.22 +0.1 583,801 - GFF544 0.22 -0.3 583,801 - GFF544 0.22 -0.5 583,801 - GFF544 0.22 -0.1 583,801 - GFF544 0.22 -0.1 583,801 - GFF544 0.22 +0.8 583,801 - GFF544 0.22 -0.6 583,801 - GFF544 0.22 -0.2 583,954 - GFF544 0.28 -0.3 583,954 - GFF544 0.28 -1.7 583,954 - GFF544 0.28 -0.4 583,954 - GFF544 0.28 +1.1 583,954 - GFF544 0.28 -1.8 583,962 + GFF544 0.28 -1.0 583,962 + GFF544 0.28 +0.3 583,962 + GFF544 0.28 -0.6 583,962 + GFF544 0.28 +0.4 583,962 + GFF544 0.28 +0.8 583,962 + GFF544 0.28 +0.3 583,962 + GFF544 0.28 -0.5 583,963 - GFF544 0.28 +2.9 583,963 - GFF544 0.28 -0.2 583,963 - GFF544 0.28 -1.4
Or see this region's nucleotide sequence