Strain Fitness in Variovorax sp. SCN45 around GFF5232

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
95,953	+				-0.5
95,954	-				+0.4
96,459	-		GFF5231	0.51	+1.1
96,882	+				-1.1
96,922	+				-0.4
96,922	+				-2.1
97,491	+		GFF5232	0.63	+0.6
97,492	-		GFF5232	0.63	+0.6
97,666	-		GFF5232	0.82	-0.7
97,719	+		GFF5232	0.88	-0.0
97,719	+		GFF5232	0.88	+0.6
97,719	+		GFF5232	0.88	+0.6
97,719	+		GFF5232	0.88	+0.1
97,719	+		GFF5232	0.88	-0.6
97,720	-		GFF5232	0.88	-0.2
97,720	-		GFF5232	0.88	-2.2
97,720	-		GFF5232	0.88	-0.4
97,720	-		GFF5232	0.88	-0.0
97,720	-		GFF5232	0.88	+0.1
98,398	+		GFF5233	0.44	-0.6
98,399	-		GFF5233	0.44	-0.5
98,399	-		GFF5233	0.44	+0.7
98,497	+		GFF5233	0.52	-0.5
98,498	-		GFF5233	0.52	-0.6
98,498	-		GFF5233	0.52	-0.7
98,671	+		GFF5233	0.66	-0.8
98,671	+		GFF5233	0.66	-0.1
98,671	+		GFF5233	0.66	-0.0
98,672	-		GFF5233	0.66	-0.8
98,672	-		GFF5233	0.66	-1.9