Strain Fitness in Variovorax sp. SCN45 around GFF5190

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5189 and GFF5190 are separated by 140 nucleotidesGFF5190 and GFF5191 are separated by 114 nucleotides GFF5189 - L-arabinolactonase (EC 3.1.1.15), at 47,111 to 48,064 GFF5189 GFF5190 - L-arabinose 1-dehydrogenase (EC 1.1.1.376), at 48,205 to 48,978 GFF5190 GFF5191 - Galactose-binding protein regulator, at 49,093 to 50,052 GFF5191 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.232 kb on + strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.233 kb on - strand, within GFF5189at 47.288 kb on + strand, within GFF5189at 47.289 kb on - strand, within GFF5189at 47.289 kb on - strand, within GFF5189at 47.476 kb on - strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.481 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.511 kb on + strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.512 kb on - strand, within GFF5189at 47.605 kb on - strand, within GFF5189at 47.605 kb on - strand, within GFF5189at 47.728 kb on - strand, within GFF5189at 47.919 kb on + strand, within GFF5189at 47.919 kb on + strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 47.920 kb on - strand, within GFF5189at 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.112 kb on + strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.113 kb on - strandat 48.128 kb on + strandat 48.547 kb on + strand, within GFF5190at 48.547 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.550 kb on + strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.551 kb on - strand, within GFF5190at 48.686 kb on - strand, within GFF5190at 48.694 kb on + strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.695 kb on - strand, within GFF5190at 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.976 kb on + strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.977 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strandat 48.985 kb on - strandat 49.118 kb on + strandat 49.119 kb on - strandat 49.119 kb on - strandat 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.265 kb on + strand, within GFF5191at 49.266 kb on - strand, within GFF5191at 49.266 kb on - strand, within GFF5191at 49.269 kb on - strand, within GFF5191at 49.269 kb on - strand, within GFF5191at 49.541 kb on + strand, within GFF5191at 49.640 kb on - strand, within GFF5191

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
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47,232 + GFF5189 0.13 -0.7
47,232 + GFF5189 0.13 -1.4
47,232 + GFF5189 0.13 -0.2
47,232 + GFF5189 0.13 +1.5
47,232 + GFF5189 0.13 -1.2
47,233 - GFF5189 0.13 -1.0
47,233 - GFF5189 0.13 +0.6
47,233 - GFF5189 0.13 +0.3
47,233 - GFF5189 0.13 -0.8
47,233 - GFF5189 0.13 +0.0
47,288 + GFF5189 0.19 -0.1
47,289 - GFF5189 0.19 +0.2
47,289 - GFF5189 0.19 +0.7
47,476 - GFF5189 0.38 +1.5
47,481 + GFF5189 0.39 -0.0
47,481 + GFF5189 0.39 -0.2
47,481 + GFF5189 0.39 +1.7
47,511 + GFF5189 0.42 -1.1
47,511 + GFF5189 0.42 -1.5
47,511 + GFF5189 0.42 -1.2
47,512 - GFF5189 0.42 +2.0
47,512 - GFF5189 0.42 +0.3
47,512 - GFF5189 0.42 +0.4
47,512 - GFF5189 0.42 -0.1
47,512 - GFF5189 0.42 +0.2
47,512 - GFF5189 0.42 -0.1
47,605 - GFF5189 0.52 +0.6
47,605 - GFF5189 0.52 -0.8
47,728 - GFF5189 0.65 -1.6
47,919 + GFF5189 0.85 +0.1
47,919 + GFF5189 0.85 +1.1
47,920 - GFF5189 0.85 +0.2
47,920 - GFF5189 0.85 +0.8
47,920 - GFF5189 0.85 -0.8
47,920 - GFF5189 0.85 -0.5
47,920 - GFF5189 0.85 -1.1
48,112 + -0.1
48,112 + -0.3
48,112 + -0.3
48,112 + -0.4
48,113 - +0.1
48,113 - -0.4
48,113 - +0.1
48,113 - -0.3
48,128 + -0.7
48,547 + GFF5190 0.44 +0.2
48,547 + GFF5190 0.44 -1.0
48,550 + GFF5190 0.45 -0.3
48,550 + GFF5190 0.45 -1.5
48,550 + GFF5190 0.45 -0.6
48,550 + GFF5190 0.45 +0.2
48,550 + GFF5190 0.45 -0.3
48,551 - GFF5190 0.45 +0.1
48,551 - GFF5190 0.45 -0.3
48,551 - GFF5190 0.45 -0.1
48,551 - GFF5190 0.45 -0.5
48,551 - GFF5190 0.45 -1.4
48,686 - GFF5190 0.62 -0.5
48,694 + GFF5190 0.63 -0.9
48,695 - GFF5190 0.63 -0.8
48,695 - GFF5190 0.63 +0.0
48,976 + -0.9
48,976 + -1.1
48,976 + -0.8
48,976 + -0.7
48,976 + -0.3
48,976 + -0.6
48,977 - +0.5
48,977 - -0.3
48,977 - -0.2
48,977 - +0.8
48,977 - -0.4
48,985 - +1.4
48,985 - -1.8
48,985 - +1.7
49,118 + -1.1
49,119 - -1.1
49,119 - -0.4
49,265 + GFF5191 0.18 +1.3
49,265 + GFF5191 0.18 +1.3
49,265 + GFF5191 0.18 -0.8
49,265 + GFF5191 0.18 +1.5
49,265 + GFF5191 0.18 +1.1
49,266 - GFF5191 0.18 -0.9
49,266 - GFF5191 0.18 +0.6
49,269 - GFF5191 0.18 +0.3
49,269 - GFF5191 0.18 -0.4
49,541 + GFF5191 0.47 -0.2
49,640 - GFF5191 0.57 -0.3

Or see this region's nucleotide sequence