Strain Fitness in Variovorax sp. SCN45 around GFF4644

Experiment: M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
102	+				-0.2
102	+				+0.4
102	+				-0.2
102	+				-0.2
103	-				-1.1
103	-				+0.0
103	-				+0.2
103	-				-0.6
103	-				-2.3
103	-				+1.1
103	-				+0.7
103	-				+1.7
103	-				+0.4
103	-				-0.6
103	-				-0.9
103	-				-0.5
103	-				-0.9
103	-				+0.2
238	-		GFF4644	0.56	-0.3
238	-		GFF4644	0.56	-0.4
238	-		GFF4644	0.56	-0.1
383	+				-0.6
384	-				-0.2
384	-				-1.0
384	-				+0.1
392	+				-0.3
428	+				+0.7
428	+				+0.0
429	-				-0.4
435	+				-0.7
435	+				-0.1
435	+				-0.8
436	-				-1.9
436	-				-0.6
436	-				-0.1
477	+				+2.0
477	+				-1.6
478	-				-0.4
478	-				-0.6
478	-				-0.0
478	-				-1.4
505	+				+0.1
505	+				+0.6
505	+				-0.3
506	-				-1.2
536	-				+0.1
600	+				+0.0
601	-				-1.1
757	+				+0.6
757	+				-1.2
757	+				+0.4
757	+				+1.2
867	+				-0.0
867	+				+0.3
867	+				-1.0
867	+				-0.8
868	-				-0.6
868	-				-0.3
868	-				+0.5
1,087	-		GFF4645	0.19	+0.4
1,176	+		GFF4645	0.24	-0.3
1,176	+		GFF4645	0.24	-0.2
1,176	+		GFF4645	0.24	-0.3
1,177	-		GFF4645	0.24	-2.3
1,177	-		GFF4645	0.24	-0.9
1,177	-		GFF4645	0.24	+0.2
1,201	-		GFF4645	0.26	+0.7